# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj00420.fasta.huge -Q ../query/KIAA1343.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1343, 520 aa vs ./tmplib.24314 library 1986985 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 12.6938+/-0.0106; mu= -22.9714+/- 0.715 mean_var=547.0414+/-130.486, 0's: 0 Z-trim: 3 B-trim: 13 in 2/38 Lambda= 0.054836 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0071 ( 396 res) ha00472 ( 396) 917 86.8 3e-18 >>KIAA0071 ( 396 res) ha00472 (396 aa) initn: 1577 init1: 759 opt: 917 Z-score: 419.4 bits: 86.8 E(): 3e-18 Smith-Waterman score: 1624; 64.675% identity (84.416% similar) in 385 aa overlap (25-407:15-385) 10 20 30 40 50 KIAA13 VSLPFSFFSFLFFIYIFWHCFADVGMRVGAEYQARIPEFDPG--ATKYTDKDNGGMLVWS ::::: .::: .:.:::. : . ..:: :::::: KIAA00 GSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWS 10 20 30 40 50 60 70 80 90 100 110 KIAA13 PYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVED : ... .:::::::::::::::::.::::::::::::::::::::::::::::::::::: KIAA00 PNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVED 60 70 80 90 100 110 120 130 140 150 160 170 KIAA13 KVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQ :::::::::::::.:::::::::::.::::::.::::::::..::.:::.::: ..... KIAA00 KVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARK--QKRER 120 130 140 150 160 180 190 200 210 220 230 KIAA13 GDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRS .:.:..::.. . : . : .::.::: :..: . ..: .: : .. :. KIAA00 EESEDELEEANGNNPIDIEVDQNKESKKE---VPPTET--VPQVKKEKHSTQAKN---RA 170 180 190 200 210 220 240 250 260 270 280 290 KIAA13 KCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGG : .:::::.:.:::: ::: . .::.:.::::::::.:.:::.:: ::.:::::.:..:: KIAA00 KRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGG 230 240 250 260 270 280 300 310 320 330 340 350 KIAA13 IEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRR :: .. :: :: ::::::::::::::..::::.:::::.::::::.: ::::::::::: KIAA00 IEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 290 300 310 320 330 340 360 370 380 390 400 410 KIAA13 RFNLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGP :::..:::::::::.: . .:: .. . .:: .: : : .::.:: KIAA00 RFNIDEVLQEWEAEHGKEETNGPSNQ--KPVKSPDN--SIKMPEEEDEAPVLDVRYASAS 350 360 370 380 390 420 430 440 450 460 470 KIAA13 SPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPP 520 residues in 1 query sequences 1986985 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:18:32 2008 done: Thu Dec 18 15:18:33 2008 Total Scan time: 0.450 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]