hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00081563/chunk_1/iprscan-20080502-00081563.nocrc
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Query sequence: KIAA1341
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                 271.5    6.4e-77   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/3     121   194 ..     1   121 []    90.4  2.2e-22
SM00360    2/3     254   326 ..     1   121 []    85.6  5.9e-21
SM00360    3/3     544   615 ..     1   121 []    95.6    6e-24

Alignments of top-scoring domains:
SM00360: domain 1 of 3, from 121 to 194: score 90.4, E = 2.2e-22
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      ++f++N+  p+d++++ +++l              ++k G+v++v +
    KIAA1341   121    RVFISNI--PYDMKWQAIKDLM-------------REKVGEVTYVEL 152  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   ++d +                      Gks+G++ VeF+dee ++kA  +
    KIAA1341   153 FKDAE----------------------GKSRGCGVVEFKDEEFVKKA--L 178  

                   ealnaskGkeledgGrptlglrVe<-*
                   e +n   +++l   Grp   l+++   
    KIAA1341   179 ETMN---KYDL--SGRP---LNIK    194  

SM00360: domain 2 of 3, from 254 to 326: score 85.6, E = 5.9e-21
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      t+fV NL  +++v ++ L+e+F              s  G+v++++i
    KIAA1341   254    TIFVANL--DFKVGWKKLKEVF--------------SIAGTVKRADI 284  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                     dkd                      Gks+G + V+Fe + +A +A  i
    KIAA1341   285 KEDKD----------------------GKSRGMGTVTFEQAIEAVQA--I 310  

                   ealnaskGkeledgGrptlglrVe<-*
                   +++n   G+ l   +rp   ++V+   
    KIAA1341   311 SMFN---GQFL--FDRP---MHVK    326  

SM00360: domain 3 of 3, from 544 to 615: score 95.6, E = 6e-24
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                       +fV+NL  p+d t++ L+e F              s++G+v  + i
    KIAA1341   544    QIFVRNL--PFDLTWQKLKEKF--------------SQCGHVMFAEI 574  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                    ++                       +GkskG++ V+F+++e+AekA  +
    KIAA1341   575 KME-----------------------NGKSKGCGTVRFDSPESAEKA--C 599  

                   ealnaskGkeledgGrptlglrVe<-*
                   + +n   G ++   Gr+   + V+   
    KIAA1341   600 RIMN---GIKI--SGRE---IDVR    615  

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