hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00081563/chunk_1/iprscan-20080502-00081563.nocrc
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Query sequence: KIAA1341
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    242.0    1.2e-69   3
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    236.2    6.6e-68   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/3     122   193 ..     1    74 []    82.5  2.2e-22
PF00076.12.ls   1/3     122   193 ..     1    74 []    84.4  3.1e-22
PF00076.12.fs   2/3     255   325 ..     1    74 []    67.3    4e-18
PF00076.12.ls   2/3     255   325 ..     1    74 []    69.3  1.2e-17
PF00076.12.fs   3/3     545   614 ..     1    74 []    86.4  1.8e-23
PF00076.12.ls   3/3     545   614 ..     1    74 []    88.3  2.2e-23

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 3, from 122 to 193: score 82.5, E = 2.2e-22
                   *->lfVgNLppdtteedLkdlFsk.fGpiesikivrDttretgrskGfaF
                      +f++N+p+d+ ++ +kdl ++++G+++ +++++D   + g+s+G++ 
    KIAA1341   122    VFISNIPYDMKWQAIKDLMREkVGEVTYVELFKD---AEGKSRGCGV 165  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   VeF+dee ++kAl+++n++ l gr+l +   
    KIAA1341   166 VEFKDEEFVKKALETMNKYDLSGRPLNI    193  

PF00076.12.ls: domain 1 of 3, from 122 to 193: score 84.4, E = 3.1e-22
                   *->lfVgNLppdtteedLkdlFsk.fGpiesikivrDttretgrskGfaF
                      +f++N+p+d+ ++ +kdl ++++G+++ +++++D   + g+s+G++ 
    KIAA1341   122    VFISNIPYDMKWQAIKDLMREkVGEVTYVELFKD---AEGKSRGCGV 165  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   VeF+dee ++kAl+++n++ l gr+l +   
    KIAA1341   166 VEFKDEEFVKKALETMNKYDLSGRPLNI    193  

PF00076.12.fs: domain 2 of 3, from 255 to 325: score 67.3, E = 4e-18
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fV NL + + +++Lk+ Fs  G +++++i+ D     g+s+G++ V
    KIAA1341   255    IFVANLDFKVGWKKLKEVFSIAGTVKRADIKED---KDGKSRGMGTV 298  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe+  +A  A++  nG+ l +r+++v   
    KIAA1341   299 TFEQAIEAVQAISMFNGQFLFDRPMHV    325  

PF00076.12.ls: domain 2 of 3, from 255 to 325: score 69.3, E = 1.2e-17
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fV NL + + +++Lk+ Fs  G +++++i+ D     g+s+G++ V
    KIAA1341   255    IFVANLDFKVGWKKLKEVFSIAGTVKRADIKED---KDGKSRGMGTV 298  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe+  +A  A++  nG+ l +r+++v   
    KIAA1341   299 TFEQAIEAVQAISMFNGQFLFDRPMHV    325  

PF00076.12.fs: domain 3 of 3, from 545 to 614: score 86.4, E = 1.8e-23
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fV+NLp+d+t+++Lk+ Fs++G ++ ++i+     e+g+skG++ V
    KIAA1341   545    IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKM----ENGKSKGCGTV 587  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F+++e+AekA + +nG+++ gre+ v   
    KIAA1341   588 RFDSPESAEKACRIMNGIKISGREIDV    614  

PF00076.12.ls: domain 3 of 3, from 545 to 614: score 88.3, E = 2.2e-23
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fV+NLp+d+t+++Lk+ Fs++G ++ ++i+     e+g+skG++ V
    KIAA1341   545    IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKM----ENGKSKGCGTV 587  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F+++e+AekA + +nG+++ gre+ v   
    KIAA1341   588 RFDSPESAEKACRIMNGIKISGREIDV    614  

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