hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00044750/chunk_1/iprscan-20080502-00044750.nocrc
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Query sequence: KIAA1339
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 186.4    2.7e-51   8

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/8     110   131 ..     1    23 []     5.0       87
SM00355      2/8     165   187 ..     1    23 []    23.0    0.041
SM00355      3/8     194   216 ..     1    23 []    26.4   0.0038
SM00355      4/8     222   244 ..     1    23 []    23.6    0.027
SM00355      5/8     250   272 ..     1    23 []    27.0   0.0026
SM00355      6/8     278   300 ..     1    23 []    25.4   0.0078
SM00355      7/8     306   328 ..     1    23 []    27.3   0.0022
SM00355      8/8     334   357 ..     1    23 []    28.6  0.00087

Alignments of top-scoring domains:
SM00355: domain 1 of 8, from 110 to 131: score 5.0, E = 87
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgk   s++ L  H+ +H   
    KIAA1339   110    FSCHH-CGKN-LSQdMLLTHQCSH    131  

SM00355: domain 2 of 8, from 165 to 187: score 23.0, E = 0.041
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +Cp+ C ++f++++ L+ H+rvH   
    KIAA1339   165    PTCPH-CARTFTHPsRLTYHLRVH    187  

SM00355: domain 3 of 8, from 194 to 216: score 26.4, E = 0.0038
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp  C+k+f ++  L+ H r H   
    KIAA1339   194    FPCPD-CPKRFADQaRLTSHRRAH    216  

SM00355: domain 4 of 8, from 222 to 244: score 23.6, E = 0.027
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + Cg+sfs k +L  H+r H   
    KIAA1339   222    FRCAQ-CGRSFSLKiSLLLHQRGH    244  

SM00355: domain 5 of 8, from 250 to 272: score 27.0, E = 0.0026
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp+ Cg  f+ ++aL+rH+++H   
    KIAA1339   250    FSCPQ-CGIDFNGHsALIRHQMIH    272  

SM00355: domain 6 of 8, from 278 to 300: score 25.4, E = 0.0078
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C+  C+ksf +k++L +H r H   
    KIAA1339   278    YPCTD-CSKSFMRKeHLLNHRRLH    300  

SM00355: domain 7 of 8, from 306 to 328: score 27.3, E = 0.0022
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp+ Cgksf +k++L +H+r+H   
    KIAA1339   306    FSCPH-CGKSFIRKhHLMKHQRIH    328  

SM00355: domain 8 of 8, from 334 to 357: score 28.6, E = 0.00087
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C++ Cg+sf+ k+ Lk H+r+ H   
    KIAA1339   334    YPCSY-CGRSFRYKqTLKDHLRsGH    357  

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