# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh16696.fasta.huge -Q ../query/KIAA1337.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1337, 1438 aa
 vs ./tmplib.24314 library

1986067 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.9581+/-0.00603; mu= 13.6885+/- 0.409
 mean_var=127.0714+/-29.640, 0's: 0 Z-trim: 1  B-trim: 0 in 0/40
 Lambda= 0.113776

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1742  ( 1301 res)   pj01304s1                  (1301)  204 45.9 5.8e-05


>>KIAA1742  ( 1301 res)   pj01304s1                       (1301 aa)
 initn: 288 init1: 107 opt: 204  Z-score: 180.9  bits: 45.9 E(): 5.8e-05
Smith-Waterman score: 204;  31.206% identity (68.085% similar) in 141 aa overlap (530-667:409-549)

     500       510       520       530       540       550         
KIAA13 EVRRTFNNDMLLAFISSSCIAALVYILTSCSVFLSFFGIASIGLSCLVALFLYHVVFGIQ
                                     :.::... . ..  : :::.:::.:.: . 
KIAA17 ELLRHFLVQDTVYPLLALVAIFFGMALYLRSLFLTLMVLLGVLGSLLVAFFLYQVAFRMA
      380       390       400       410       420       430        

     560       570       580       590          600       610      
KIAA13 YLGILNGVAAFVIVGIGVDDVFVFINTYRQA-THLEDPQL--RMIHTVQTAGKATFFTSL
       :. ..: .: ... .. .. ...:.. .: . ..: .  :  :. .:..  :   . ..:
KIAA17 YFPFVNLAALLLLSSVCANHTLIFFDLWRLSKSQLPSGGLAQRVGRTMHHFGYLLLVSGL
      440       450       460       470       480       490        

        620       630       640       650       660       670      
KIAA13 TTAAAYAANVFSQIPAVHDFGLFMSLIVSCCWLAVLVTMPAALGLWSLYLAPLESSCQTS
       ::.::. :. .:..:::. ..:::.  :      .:: .::.  :   :::         
KIAA17 TTSAAFYASYLSRLPAVRCLALFMGTAVLVHLALTLVWLPASAVLHERYLARGCARRARG
      500       510       520       530       540       550        

        680       690       700       710       720       730      
KIAA13 CHQNCSRKTSLHFPGDVFATPEQVGGSPAQGPIPYLDDDIPLLEVEEEPVSLELGDVSLV
                                                                   
KIAA17 RWEGSAPRRLLLALHRRLRGLRRAAAGTSRLLFQRLLPCGVIKFRYIWICWFAALAAGGA
      560       570       580       590       600       610        




1438 residues in 1 query   sequences
1986067 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:18:19 2008 done: Thu Dec 18 15:18:20 2008
 Total Scan time:  0.810 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]