hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23595090/chunk_1/iprscan-20080501-23595090.nocrc
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Query sequence: KIAA1336
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  43.3    3.3e-08   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/5      42    80 ..     1    46 []     8.8       20
SM00320    2/5      98   137 ..     1    46 []    21.1     0.15
SM00320    3/5     142   181 ..     1    46 []     7.1       37
SM00320    4/5     185   222 ..     1    46 []     2.7  1.9e+02
SM00320    5/5     531   568 ..     1    46 []     3.6  1.3e+02

Alignments of top-scoring domains:
SM00320: domain 1 of 5, from 42 to 80: score 8.8, E = 20
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        +   +++  +      +v+++          ++a+g++Dg +++ 
    KIAA1336    42    YlSKKISIP-NNV--KLQCVSWNKEQ------GFIACGGeDGLLKVL 79   

                   d<-*
                   +   
    KIAA1336    80 K    80   

SM00320: domain 2 of 5, from 98 to 137: score 21.1, E = 0.15
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +  +tl+gH+g  +V  v+++         + l +++++g i +W
    KIAA1336    98    NlSMNQTLEGHSG--SVQVVTWNEQY------QKLTTSDeNGLIIVW 136  

                   d<-*
                       
    KIAA1336   137 M    137  

SM00320: domain 3 of 5, from 142 to 181: score 7.1, E = 37
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++   ++ +  ++   V+s++++ dg      + ++   +Dg + + 
    KIAA1336   142    SwIEEMINNRNKS--VVRSMSWNADG------QKICIVYeDGAVIVG 180  

                   d<-*
                   +   
    KIAA1336   181 S    181  

SM00320: domain 4 of 5, from 185 to 222: score 2.7, E = 1.9e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++   + lkg +     ++v++s d+      ++l+ g  +g i+++
    KIAA1336   185    NrIWGKDLKGIQL----SHVTWSADS------KVLLFGMaNGEIHIY 221  

                   d<-*
                   d   
    KIAA1336   222 D    222  

SM00320: domain 5 of 5, from 531 to 568: score 3.6, E = 1.3e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                           +t++g ++  p+++++ s+         +l++g + gti  +
    KIAA1336   531    VlDYSKTIQGTRD--PICAITASDK--------ILIVGReSGTIQRY 567  

                   d<-*
                   +   
    KIAA1336   568 S    568  

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