hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23595090/chunk_1/iprscan-20080501-23595090.nocrc
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Query sequence: KIAA1336
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.fs WD domain, G-beta repeat                        34.4      1e-08   4
PF00400.22.ls WD domain, G-beta repeat                        35.9    1.3e-07   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/4      57    80 ..    14    38 .]    12.0     0.02
PF00400.22.fs   2/4      99   137 ..     1    38 []    15.1   0.0027

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 4, from 57 to 80: score 12.0, E = 0.02
                   *->cvafspdsgpllasgSrDgtikiWd<-*
                      cv+++ + + ++a+g++Dg +k+ +   
    KIAA1336    57    CVSWNKE-QGFIACGGEDGLLKVLK    80   

PF00400.22.fs: domain 2 of 4, from 99 to 137: score 15.1, E = 0.0027
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                          ++l+gH+++V  v ++   ++ l ++ ++g i +W    
    KIAA1336    99    LSMNqTLeGHSGSVQVVTWNEQ-YQKLTTSDENGLIIVWM    137  

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