# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/bg00080.fasta.huge -Q ../query/KIAA1336.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1336, 1219 aa
 vs ./tmplib.24314 library

1986286 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.3811+/-0.00511; mu= 19.0316+/- 0.350
 mean_var=90.3936+/-20.907, 0's: 0 Z-trim: 5  B-trim: 0 in 0/40
 Lambda= 0.134898

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1397  ( 686 res)   hj08255                     ( 686)  395 88.1 5.1e-18


>>KIAA1397  ( 686 res)   hj08255                          (686 aa)
 initn: 355 init1: 188 opt: 395  Z-score: 415.3  bits: 88.1 E(): 5.1e-18
Smith-Waterman score: 496;  29.330% identity (57.821% similar) in 358 aa overlap (43-369:28-378)

             20        30        40        50          60        70
KIAA13 VLPIGDVEPLLVEGLSGRRDPLGDPTMFFYLSKKISIPNNVKLQ--CVSWNKEQGFIACG
                                     :: :  .:.. : .  :     :.:..: :
KIAA13    VKQFIEESMYAAVEHGPVLCSDSNILCLSWKGRVPKSEKEKPVCRRRYYEEGWLATG
                  10        20        30        40        50       

               80        90       100       110       120       130
KIAA13 GEDGLLKVLKLETQTDDAKLRGLAAPSNLSMNQTLEGHSGSVQVVTWNEQYQKLTTSDEN
       .  :.. :    : :..   :  ..:. ...:  :.::.. : .: ::: ::::.: : .
KIAA13 NGRGVVGV----TFTSSHCRRDRSTPQRINFN--LRGHNSEVVLVRWNEPYQKLATCDAD
        60            70        80          90       100       110 

              140       150       160       170       180       190
KIAA13 GLIIVWMLYKGSWIEEMINNRNKSVVRSMSWNADGQKICIVYEDGAVIVGSVDGNRIWGK
       : :.::. :.: :  :..:.:. .:  ...:. :: .  : :.:: :.::::.:.: :..
KIAA13 GGIFVWIQYEGRWSVELVNDRGAQV-SDFTWSHDGTQALISYRDGFVLVGSVSGQRHWSS
             120       130        140       150       160       170

               200       210       220       230       240         
KIAA13 DLK-GIQLSHVTWSADSKVLLFGMANGEIHIYDNQGNFMIKMKLSCLVNVTGAISIAGIH
       ...   :..   :. :.. .::: :.:.. ..: .: .. .. :    .: :      : 
KIAA13 EINLESQITCGIWTPDDQQVLFGTADGQVIVMDCHGRMLAHVLLHESDGVLGMSWNYPIF
              180       190       200       210       220       230

     250              260                    270       280         
KIAA13 WYHGT-------EGYVEPD-------------CPCLAVCFDNGRCQIMRHENDQNPVLID
         . .       . :. :.              : :.: : .:  ..: . .: .:..: 
KIAA13 LVEDSSESDTDSDDYAPPQDGPAAYPIPVQNIKPLLTVSFTSGDISLMNNYDDLSPTVIR
              240       250       260       270       280       290

     290       300       310       320              330        340 
KIAA13 TGMYVVGIQWNHMGSVLAVAGFQKAAMQDKDVN-------IVQFYTPFGEHLGTLK-VPG
       .:.  :  ::  .:..:::::... ..  .  :       .:.::.  :::. ::  .  
KIAA13 SGLKEVVAQWCTQGDLLAVAGMERQTQLGELPNGPLLKSAMVKFYNVRGEHIFTLDTLVQ
              300       310       320       330       340       350

             350       360       370       380       390       400 
KIAA13 KEISALSWEGGGLKIALAVDSFIYFANIRPNYKWGYCSNTVVYAYTRPDRPEYCVVFWDT
       . : .. :     .. .:    .: . .                                
KIAA13 RPIISICWGHRDSRLLMASGPALYVVRVEHRVSSLQLLCQQAIASTLREDKDVSKLTLPP
              360       370       380       390       400       410




1219 residues in 1 query   sequences
1986286 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:18:16 2008 done: Thu Dec 18 15:18:17 2008
 Total Scan time:  0.730 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]