hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23544355/chunk_1/iprscan-20080501-23544355.nocrc
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Query sequence: KIAA1333
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00119                                                 -98.5    3.7e-05   1
SM00249                                                  27.9     0.0014   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00249    1/2     115   163 ..     1    39 []    18.3     0.88
SM00249    2/2     178   228 ..     1    39 []     9.6        5
SM00119    1/1     408   729 ..     1   407 []   -98.5  3.7e-05

Alignments of top-scoring domains:
SM00249: domain 1 of 2, from 115 to 163: score 18.3, E = 0.88
                   *->yC.vCgk.g.llqCd.kgCdrwyHv.Clgpple....epdg.wyCpr
                       C vC+k+g  ++C  ++C+r+yH++C    ++  +   ++  +C  
    KIAA1333   115    KCcVCKKnGaSIGCVaPRCKRSYHFpCGLQRECifqfTGNFaSFCWD 161  

                   Ck<-*
                   ++   
    KIAA1333   162 HR    163  

SM00249: domain 2 of 2, from 178 to 228: score 9.6, E = 5
                   *->yC.vCgk......g.llqCdkgCd.rwyHv.Clgpple.epdg.wyC
                       C++C +  ++ ++  ++ ++ C++ w+H +Cl+    ++  + ++C
    KIAA1333   178    PCtICLEfiepipSyNILRSPCCKnAWFHRdCLQVQAInAGVFfFRC 224  

                   prCk<-*
                     C    
    KIAA1333   225 TICN    228  

SM00119: domain 1 of 1, from 408 to 729: score -98.5, E = 3.7e-05
                   *->nsspddLkkrske...aLeIefvvnehgvgEeglDgGGvtrEFffll
                      ns  d ++ r   ++ a+e+ + v+e   ++ g   +G   EF++ll
    KIAA1333   408    NSALDAFRNRNFNpsyAIEVAY-VIE--NDNFGSEHPGSKQEFLSLL 451  

                   skelfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehl
                    + l n     LF+ s ++n               L  n  a   ++   
    KIAA1333   452 MQHLENS---SLFEGSLSKN---------------LSLNSQALK-EN--- 479  

                   aavyFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDles
                      +++  G++l++ l ++   + +F++ ++  L   p +t + l+D ++
    KIAA1333   480 ---LYYEAGKMLAISLVHGGPSPGFFSKTLFNCLVYGPENTQPILDDVSD 526  

                   lDPelyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsiv
                   +D  + + +  +                    +   t  +l     + ++
    KIAA1333   527 FD--VAQIIIRI--------------------NTATTVADLK--SIINEC 552  

                   lesdfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAF
                   ++  ++  +   L++       T + k+  V     y+ +++v+ ++e F
    KIAA1333   553 YNY-LELIGCLRLIT-------TLSDKYMLVKDILGYHVIQRVHTPFESF 594  

                   reGFseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYte
                   ++G++ +  +e ++++  +e +  ++c  +e ++++ L +  +++   t 
    KIAA1333   595 KQGLKTLGVLEKIQAY--PEAFCSILCHKPESLSAKILSELFTVH---TL 639  

                   nsqtirfkkwFW....evve...sFtneerrkLLqFVTGssrlPASvgGF
                    + +      FW++  ++ve+++s t +e  + L F TG+s++P  ++GF
    KIAA1333   640 PDVKA---LGFWnsylQAVEdgkSTTTME--DILIFATGCSSIP--PAGF 682  

                   aaLspsNGpqkF.tIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiL
                   ++ +      ++++++++          +P  + C N L +P  ++++  
    KIAA1333   683 KPTP------SIeCLHVD----------FPVGNKCNNCLAIPITNTYKEF 716  

                   reKLLlAInegRiggeGFgls<-*
                   +e +   I++         l+   
    KIAA1333   717 QENMDFTIRN--------TLR    729  

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