# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh15412.fasta.huge -Q ../query/KIAA1333.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1333, 741 aa vs ./tmplib.24314 library 1986764 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 3.8629+/-0.00519; mu= 23.1467+/- 0.354 mean_var=96.6609+/-22.576, 0's: 0 Z-trim: 9 B-trim: 0 in 0/40 Lambda= 0.130451 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1823 ( 377 res) fj18328 ( 377) 295 65.8 9e-12 KIAA0304 ( 2415 res) af07172 (2415) 202 49.6 4.3e-06 KIAA0292 ( 1716 res) ha06353 (1716) 186 46.3 2.9e-05 >>KIAA1823 ( 377 res) fj18328 (377 aa) initn: 265 init1: 237 opt: 295 Z-score: 303.2 bits: 65.8 E(): 9e-12 Smith-Waterman score: 295; 31.410% identity (65.385% similar) in 156 aa overlap (38-188:18-165) 10 20 30 40 50 60 KIAA13 SRSACPDVQRAGKSGTEALELLPSSPCKMNESKPGDSQNLACVFCRKHDDCPNKYGEKKT :.: : ... : ::... : .. :. KIAA18 DLKWHSKGNLKIMSSSVEQKKGPTRQRKCGFCKSNRD--KECGQLLI 10 20 30 40 70 80 90 100 110 120 KIAA13 KEKWNLTVHYYCLLMSSGIWQRGKEEEGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIG .:. ....:. :.:.::.. . ...:.. :: :::..::..:..:: : .:. ::.:: KIAA18 SENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIG 50 60 70 80 90 100 130 140 150 160 170 180 KIAA13 CVAPRCKRSYHFPCGLQ-----RECIFQFTGNFASFCWDHRPVQIITSNNYRESLPCTIC : . :.:.::. :.:. :: : : . .: :. :..: . .: .. KIAA18 CDVKTCHRTYHYHCALHDKAQIREKPSQ--GIYMVYCRKHKK----TAHNSEADLEESFN 110 120 130 140 150 190 200 210 220 230 240 KIAA13 LEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGI . .:: KIAA18 EHELEPSSPKSKKKSRKGRPRKTNFKGLSEDTRSTSSHGTDEMESSSYRDRSPHRSSPSD 160 170 180 190 200 210 >>KIAA0304 ( 2415 res) af07172 (2415 aa) initn: 153 init1: 153 opt: 202 Z-score: 201.3 bits: 49.6 E(): 4.3e-06 Smith-Waterman score: 202; 26.087% identity (52.899% similar) in 138 aa overlap (30-162:1257-1385) 10 20 30 40 50 KIAA13 WAVECGCSRSACPDVQRAGKSGTEALELLPSSPCKMNESK-PGDSQNLA----CVFCRK :..: ..: :. ..: :..: : KIAA03 LPNAVLPPSLDHVYAQWRQQEPETPESGQPPGDPSAAFQGKDPAAFSHLEDPRQCALCLK 1230 1240 1250 1260 1270 1280 60 70 80 90 100 110 KIAA13 HDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEGVYGFLIEDIRKEVNRASKL . : .: . . : .: : . :. ... :..: ..... : :. .. KIAA03 YGDADSKEAGRLLYIGQNEWTHVNCAIWSAEVFE---ENDGS----LKNVHAAVARGRQM 1290 1300 1310 1320 1330 120 130 140 150 160 170 KIAA13 KCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNFASFCWDHRPVQIITSNNYR .: .: : ::..:: : ..:: :. :::: . :: : KIAA03 RCELCLKPGATVGCCLSSCLSNFHFMCARASYCIFQ--DDKKVFCQKHTDLLDGKEIVNP 1340 1350 1360 1370 1380 1390 180 190 200 210 220 230 KIAA13 ESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAINAGVFFFRCTICNNSDIFQ KIAA03 DGFDVLRRVYVDFEGINFKRKFLTGLEPDAINVLIGSIRIDSLGTLSDLSDCEGRLFPIG 1400 1410 1420 1430 1440 1450 >>KIAA0292 ( 1716 res) ha06353 (1716 aa) initn: 134 init1: 134 opt: 186 Z-score: 186.4 bits: 46.3 E(): 2.9e-05 Smith-Waterman score: 190; 33.333% identity (60.606% similar) in 99 aa overlap (67-164:1605-1690) 40 50 60 70 80 90 KIAA13 NESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQR-GKEEEG ..: : :: :.: ..::. :. KIAA02 KTVLDSKPSVPTTSEGGPELELQIPELPLDSNEFW---VHEGCILWANGIYLVCGR---- 1580 1590 1600 1610 1620 100 110 120 130 140 150 KIAA13 VYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNF .:: : : . :. : ..:: :.. ::..:: :. ::.::... .:... :: KIAA02 LYG-LQEAL--EIAR--EMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLLH-EENF 1630 1640 1650 1660 1670 1680 160 170 180 190 200 210 KIAA13 ASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAI . : :.: KIAA02 SVRCPKHKPPLPCPLPPLQNKTAKGSLSTEQSERG 1690 1700 1710 741 residues in 1 query sequences 1986764 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:18:07 2008 done: Thu Dec 18 15:18:08 2008 Total Scan time: 0.560 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]