hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23512447/chunk_1/iprscan-20080501-23512447.nocrc
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Query sequence: KIAA1331
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF02902.9.fs  Ulp1 protease family, C-terminal cataly   179.6    2.8e-55   1
PF02902.9.ls  Ulp1 protease family, C-terminal cataly   181.4    2.1e-51   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF02902.9.fs    1/1     395   587 ..     1   245 []   179.6  2.8e-55
PF02902.9.ls    1/1     395   587 ..     1   245 []   181.4  2.1e-51

Alignments of top-scoring domains:
PF02902.9.fs: domain 1 of 1, from 395 to 587: score 179.6, E = 2.8e-55
                   *->isitmrdlktltkkewlnDtiidfylrylaerllpdPilkekftsal
                        it  d++tl + +wlnD++i+fy+++l+er ++      k+  + 
    KIAA1331   395    LRITRGDIQTLKNYHWLNDEVINFYMNLLVER-NK------KQGYPA 434  

                   thffnsFfytklksrfkwgdekdelykdvkrgtargekkkkkdlfdkDyi
                   +h+f++Ffy+klks +         y+ vkr+t      k++ lf+ ++i
    KIAA1331   435 LHVFSTFFYPKLKSGG---------YQAVKRWT------KGVNLFEQEII 469  

                   yvPinedgkksHWvllvIdlpdkkkkdqstivilDSlislntekavktit
                   +vPi+ +    HW+l+vIdl++k      +  +lDS+++   +    ++ 
    KIAA1331   470 LVPIHRKV---HWSLVVIDLRKK------CLKYLDSMGQKGHR----ICE 506  

                   alarplsdelpylkrerlslkksfdkkswdlqpfeikrltmkvPQQpngy
                   +l ++l+de +  kr+  s ++++    ++       + ++++PQQ ng+
    KIAA1331   507 ILLQYLQDESKT-KRN--S-DLNLLEWTHH------SMKPHEIPQQLNGS 546  

                   DCGiyvlkfielfaegppqdfmttindkklkdlksfrkklakeiyeel<-
                   DCG++++k++++++++ p +f++        +++ frkk++ ei++++  
    KIAA1331   547 DCGMFTCKYADYISRDKPITFTQ-------HQMPLFRKKMVWEILHQQ   587  

                   *
                    
    KIAA1331     -   -    

PF02902.9.ls: domain 1 of 1, from 395 to 587: score 181.4, E = 2.1e-51
                   *->isitmrdlktltkkewlnDtiidfylrylaerllpdPilkekftsal
                        it  d++tl + +wlnD++i+fy+++l+er ++      k+  + 
    KIAA1331   395    LRITRGDIQTLKNYHWLNDEVINFYMNLLVER-NK------KQGYPA 434  

                   thffnsFfytklksrfkwgdekdelykdvkrgtargekkkkkdlfdkDyi
                   +h+f++Ffy+klks +         y+ vkr+t      k++ lf+ ++i
    KIAA1331   435 LHVFSTFFYPKLKSGG---------YQAVKRWT------KGVNLFEQEII 469  

                   yvPinedgkksHWvllvIdlpdkkkkdqstivilDSlislntekavktit
                   +vPi+ +    HW+l+vIdl++k      +  +lDS+++   +    ++ 
    KIAA1331   470 LVPIHRKV---HWSLVVIDLRKK------CLKYLDSMGQKGHR----ICE 506  

                   alarplsdelpylkrerlslkksfdkkswdlqpfeikrltmkvPQQpngy
                   +l ++l+de +  kr+  s ++++    ++       + ++++PQQ ng+
    KIAA1331   507 ILLQYLQDESKT-KRN--S-DLNLLEWTHH------SMKPHEIPQQLNGS 546  

                   DCGiyvlkfielfaegppqdfmttindkklkdlksfrkklakeiyeel<-
                   DCG++++k++++++++ p +f++        +++ frkk++ ei++++  
    KIAA1331   547 DCGMFTCKYADYISRDKPITFTQ-------HQMPLFRKKMVWEILHQQ   587  

                   *
                    
    KIAA1331     -   -    

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