hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23494752/chunk_1/iprscan-20080501-23494752.nocrc
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Query sequence: KIAA1330
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
SM00811                                                 197.0    1.8e-54   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
SM00811        1/1     660   857 ..     1   255 []   197.0  1.8e-54

Alignments of top-scoring domains:
SM00811: domain 1 of 1, from 660 to 857: score 197.0, E = 1.8e-54
                   *->sgkwtvsetrvkikelkpFakGamRvAfrgkdlseddplfgsgteiV
                        k +++ +++ +  +  F+ G  R+++               ++  
    KIAA1330   660    LRKASQAKVIYGL--EPIFESG--RTCII--------------KVSS 688  

                   lKyfkkeyketvdeerYFeetLhLclrdvemQmvakefaeeFNkela.ln
                   l +f+++++++  + r+++    ++++ ++ Q++++e++++F +e++ ++
    KIAA1330   689 LLVFGPSSETSL-VGRNYD----VTIQGCKIQNMSREYCKIFAAEARaAP 733  

                   pspkkieFlpsyvlelkrripaeydrsgpgffsyrttdtlevlkkiiftv
                   ++++++e++p+y+++++        +++p+                 +t+
    KIAA1330   734 GFGEVPEIIPLYLIYRP-------ANNIPY-----------------ATL 759  

                   EpfLeGeFvKYNsNn.GwvndearstetserRteafeapqAFSHFTYerS
                   E+ L+   + Y+s+  G++ ++++s++     +ea++++q+F+H+ Y+++
    KIAA1330   760 EEDLGKPLESYCSREwGCAEAPTASGS-----SEAMQKCQTFQHWLYQWT 804  

                   ggslLVvDlQGVitkngdLylLTDPqIHtedengfgfgkgNLGeeGIekF
                   +gs+LV+Dl GV    ++  ++TD+qI+t+ + g+++ k  + ++ +++F
    KIAA1330   805 NGSFLVTDLAGV----DW--KMTDVQIATKLR-GYQGLKESCFPALLDRF 847  

                   fatHkCNaiC<-*
                   +++H+CNa+C   
    KIAA1330   848 ASSHQCNAYC    857  

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