hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23494752/chunk_1/iprscan-20080501-23494752.nocrc
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Query sequence: KIAA1330
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF02816.8.ls Alpha-kinase family                        -70.6     0.0003   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF02816.8.ls   1/1     659   857 ..     1   241 []   -70.6   0.0003

Alignments of top-scoring domains:
PF02816.8.ls: domain 1 of 1, from 659 to 857: score -70.6, E = 0.0003
                   *->stskWtqsevlvkleklstpfakGalReA.frvkklsqedDilKlga
                         k +q  v+  le+    f  G  R++  +v +l +         
    KIAA1330   659    GLRKASQAKVIYGLEPI---FESG--RTCiIKVSSLLV--------- 691  

                   lfivksdlkevgryvsKiykeqtsrhlyFeDVqmQmaAkkwaeeFNqlKa
                    f+ +s++++vgr ++          +     + Q   + +   F    a
    KIAA1330   692 -FGPSSETSLVGRNYD----------VTIQGCKIQNMSREYCKIF---AA 727  

                   eqNiPpkkidflqscvveLiDrtgsgnGqgplcsiEpyieGeFrKYNnNs
                   e    p   + +  + + Li+r+  +    p  ++E+ +      Y +  
    KIAA1330   728 EARAAPGFGEVPEIIPLYLIYRPANN---IPYATLEEDLGKPLESYCSRE 774  

                   .GdenKEvfvstddaretp...QAFSHFTYErSnhqllVvDlQGVgtGNG
                    G    E+ + +  + e++++ Q F H+ Y  +n+ +lV Dl GV+    
    KIAA1330   775 wG--CAEAPTAS-GSSEAMqkcQTFQHWLYQWTNGSFLVTDLAGVD---- 817  

                   KGLdlyTDPQIHTvdpKrSy...GtgFGdgNLGerGiakFfNNatHkCNa
                        +TD QI T+   r y++  ++ +++ L       F    +H CNa
    KIAA1330   818 ---WKMTDVQIATKL--RGYqglKESCFPALL-----DRFA--SSHQCNA 855  

                   iC<-*
                    C   
    KIAA1330   856 YC    857  

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