# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/fh14327.fasta.nr -Q ../query/KIAA1325.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1325, 354 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7825025 sequences Expectation_n fit: rho(ln(x))= 4.8714+/-0.000182; mu= 11.1675+/- 0.010 mean_var=67.5226+/-13.084, 0's: 27 Z-trim: 48 B-trim: 11 in 1/64 Lambda= 0.156081 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|166199159|sp|Q9P2M1.2|LR2BP_HUMAN RecName: Full ( 347) 2321 531.4 1e-148 gi|52545649|emb|CAB82313.2| hypothetical protein [ ( 349) 2307 528.3 9e-148 gi|109076354|ref|XP_001085019.1| PREDICTED: simila ( 348) 2238 512.8 4.3e-143 gi|75075420|sp|Q4R3N2.1|LR2BP_MACFA RecName: Full= ( 348) 2229 510.7 1.7e-142 gi|149742772|ref|XP_001490987.1| PREDICTED: simila ( 348) 2170 497.4 1.7e-138 gi|73979482|ref|XP_848800.1| PREDICTED: similar to ( 348) 2150 492.9 3.9e-137 gi|119918083|ref|XP_616622.3| PREDICTED: similar t ( 348) 2149 492.7 4.6e-137 gi|119625054|gb|EAX04649.1| LRP2 binding protein, ( 321) 2097 481.0 1.4e-133 gi|148703618|gb|EDL35565.1| Lrp2 binding protein, ( 367) 2056 471.8 9.6e-131 gi|149021412|gb|EDL78875.1| similar to low density ( 367) 2053 471.1 1.5e-130 gi|81882380|sp|Q569C2.1|LR2BP_RAT RecName: Full=LR ( 346) 2047 469.7 3.8e-130 gi|149021411|gb|EDL78874.1| similar to low density ( 346) 2043 468.8 7e-130 gi|81917011|sp|Q9D4C6.1|LR2BP_MOUSE RecName: Full= ( 346) 2029 465.7 6.2e-129 gi|73979484|ref|XP_532842.2| PREDICTED: similar to ( 322) 1952 448.3 9.8e-124 gi|126331245|ref|XP_001368974.1| PREDICTED: simila ( 347) 1805 415.3 9.5e-114 gi|21410303|gb|AAH30908.1| Lrp2bp protein [Mus mus ( 292) 1758 404.6 1.3e-110 gi|114597252|ref|XP_526753.2| PREDICTED: similar t ( 282) 1725 397.2 2.2e-108 gi|149413770|ref|XP_001517141.1| PREDICTED: hypoth ( 370) 1359 314.8 1.7e-83 gi|82184767|sp|Q6IND7.1|LR2BP_XENLA RecName: Full= ( 341) 1312 304.2 2.5e-80 gi|165971190|gb|AAI58487.1| LOC100145071 protein [ ( 341) 1300 301.5 1.6e-79 gi|50746455|ref|XP_420505.1| PREDICTED: similar to ( 324) 1293 299.9 4.6e-79 gi|210105650|gb|EEA53657.1| hypothetical protein B ( 336) 1108 258.3 1.6e-66 gi|166199146|sp|A5PLI4.1|LR2BP_DANRE RecName: Full ( 343) 1087 253.6 4.4e-65 gi|115934757|ref|XP_001183497.1| PREDICTED: simila ( 359) 1067 249.1 1e-63 gi|198428050|ref|XP_002123936.1| PREDICTED: simila ( 346) 1051 245.5 1.2e-62 gi|115758147|ref|XP_797245.2| PREDICTED: similar t ( 338) 1045 244.1 3.1e-62 gi|156221914|gb|EDO42764.1| predicted protein [Nem ( 346) 986 230.8 3.1e-58 gi|190582691|gb|EDV22763.1| hypothetical protein T ( 333) 948 222.3 1.1e-55 gi|26356292|dbj|BAC25168.1| unnamed protein produc ( 158) 870 204.4 1.3e-50 gi|74215783|dbj|BAE23427.1| unnamed protein produc ( 132) 802 189.1 4.5e-46 gi|221107788|ref|XP_002168803.1| PREDICTED: simila ( 157) 457 111.4 1.2e-22 gi|221723713|gb|ACM26869.1| conserved hypothetical ( 393) 275 70.8 5.4e-10 gi|189497677|gb|ACE06224.1| hypothetical protein A ( 684) 275 71.0 8.2e-10 gi|78172090|gb|ABB29186.1| Sel1-like repeat [Chlor ( 425) 269 69.5 1.5e-09 gi|126705085|gb|EBA04176.1| Sel1-like repeat prote ( 414) 268 69.2 1.7e-09 gi|195933112|gb|ACG57812.1| Sel1 domain protein re ( 343) 267 68.9 1.7e-09 gi|46399986|emb|CAF23435.1| conserved hypothetical ( 412) 267 69.0 1.9e-09 gi|198258027|gb|EDY82335.1| Sel1 repeat family [Ve ( 451) 259 67.2 7.3e-09 gi|189497776|gb|ACE06323.1| hypothetical protein A (1039) 263 68.4 7.3e-09 gi|193086754|gb|ACF12030.1| Sel1 domain protein re ( 524) 259 67.3 8.2e-09 gi|56542607|gb|AAV88761.1| conserved hypothetical ( 418) 256 66.5 1.1e-08 gi|7225642|gb|AAF40857.1| conserved hypothetical p ( 198) 252 65.4 1.2e-08 gi|150028310|gb|ABR60427.1| Sel1 domain protein re ( 380) 255 66.3 1.2e-08 gi|158511554|gb|ABW68521.1| Sel1 domain protein re ( 254) 253 65.7 1.2e-08 gi|189497997|gb|ACE06544.1| hypothetical protein A (1402) 258 67.4 2e-08 gi|146397542|gb|ABQ26175.1| Sel1 domain protein re ( 557) 253 65.9 2.2e-08 gi|76884477|gb|ABA59158.1| Sel1-like repeat protei ( 241) 248 64.5 2.5e-08 gi|182379075|gb|EDT76579.1| Sel1 repeat family [Cl ( 267) 246 64.1 3.7e-08 gi|198262084|gb|EDY86367.1| Sel1 domain protein re ( 281) 246 64.1 3.9e-08 gi|71147552|gb|AAZ28025.1| conserved domain protei ( 235) 244 63.6 4.6e-08 >>gi|166199159|sp|Q9P2M1.2|LR2BP_HUMAN RecName: Full=LRP (347 aa) initn: 2321 init1: 2321 opt: 2321 Z-score: 2826.3 bits: 531.4 E(): 1e-148 Smith-Waterman score: 2321; 100.000% identity (100.000% similar) in 347 aa overlap (8-354:1-347) 10 20 30 40 50 60 KIAA13 NTHCRKRMKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTDYTHANLVDKALQLLKER ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 MKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTDYTHANLVDKALQLLKER 10 20 30 40 50 70 80 90 100 110 120 KIAA13 ILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 ILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEKG 60 70 80 90 100 110 130 140 150 160 170 180 KIAA13 VDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKASV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 VDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKASV 120 130 140 150 160 170 190 200 210 220 230 240 KIAA13 KAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 KAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQC 180 190 200 210 220 230 250 260 270 280 290 300 KIAA13 LREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 LREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFIG 240 250 260 270 280 290 310 320 330 340 350 KIAA13 RGMAMASFYHARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 RGMAMASFYHARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI 300 310 320 330 340 >>gi|52545649|emb|CAB82313.2| hypothetical protein [Homo (349 aa) initn: 2103 init1: 2103 opt: 2307 Z-score: 2809.2 bits: 528.3 E(): 9e-148 Smith-Waterman score: 2307; 99.427% identity (99.427% similar) in 349 aa overlap (8-354:1-349) 10 20 30 40 50 KIAA13 NTHCRKRMKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKT--DYTHANLVDKALQLLK ::::::::::::::::::::::::::::::::::: :::::::::::::::: gi|525 MKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTKSDYTHANLVDKALQLLK 10 20 30 40 50 60 70 80 90 100 110 KIAA13 ERILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|525 ERILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAE 60 70 80 90 100 110 120 130 140 150 160 170 KIAA13 KGVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|525 KGVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKA 120 130 140 150 160 170 180 190 200 210 220 230 KIAA13 SVKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|525 SVKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAAL 180 190 200 210 220 230 240 250 260 270 280 290 KIAA13 QCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|525 QCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEF 240 250 260 270 280 290 300 310 320 330 340 350 KIAA13 IGRGMAMASFYHARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|525 IGRGMAMASFYHARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI 300 310 320 330 340 >>gi|109076354|ref|XP_001085019.1| PREDICTED: similar to (348 aa) initn: 2033 init1: 2033 opt: 2238 Z-score: 2725.3 bits: 512.8 E(): 4.3e-143 Smith-Waterman score: 2238; 95.977% identity (99.138% similar) in 348 aa overlap (8-354:1-348) 10 20 30 40 50 KIAA13 NTHCRKRMKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTD-YTHANLVDKALQLLKE ::::::::::::::::.::::::::: :::.::::: :.:::::::::::::. gi|109 MKLTSEKLPKNPFYASISQYAAKNQKPFQWEKEKTDHYSHANLVDKALQLLKK 10 20 30 40 50 60 70 80 90 100 110 KIAA13 RILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEK :::::::::::::::::::::::::::::::::.:::::::::::::::::::: :..:: gi|109 RILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIEEKDHQATYQLGVMYYDGLGTILNSEK 60 70 80 90 100 110 120 130 140 150 160 170 KIAA13 GVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKAS :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|109 GVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLFAADNGNPKAS 120 130 140 150 160 170 180 190 200 210 220 230 KIAA13 VKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|109 VKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALH 180 190 200 210 220 230 240 250 260 270 280 290 KIAA13 CLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 CLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFI 240 250 260 270 280 290 300 310 320 330 340 350 KIAA13 GRGMAMASFYHARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI .::::::::::::::::::::::::.::::::::::::::::::::::::::::: gi|109 SRGMAMASFYHARCLQLGLGITRDEATAKHYYSKACRLNPALADELHSLLIRQRI 300 310 320 330 340 >>gi|75075420|sp|Q4R3N2.1|LR2BP_MACFA RecName: Full=LRP2 (348 aa) initn: 2023 init1: 2023 opt: 2229 Z-score: 2714.3 bits: 510.7 E(): 1.7e-142 Smith-Waterman score: 2229; 95.690% identity (99.138% similar) in 348 aa overlap (8-354:1-348) 10 20 30 40 50 KIAA13 NTHCRKRMKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTD-YTHANLVDKALQLLKE ::::::::::::::::.::::::::: :::.::::: :.:::::::::::::. gi|750 MKLTSEKLPKNPFYASISQYAAKNQKSFQWEKEKTDHYSHANLVDKALQLLKK 10 20 30 40 50 60 70 80 90 100 110 KIAA13 RILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEK :::::::::::::::::::::::::::::::::.:::::::::::::::::::: :..:: gi|750 RILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIEEKDHQATYQLGVMYYDGLGTILNSEK 60 70 80 90 100 110 120 130 140 150 160 170 KIAA13 GVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKAS :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|750 GVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLFAADNGNPKAS 120 130 140 150 160 170 180 190 200 210 220 230 KIAA13 VKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|750 VKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALH 180 190 200 210 220 230 240 250 260 270 280 290 KIAA13 CLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 CLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFI 240 250 260 270 280 290 300 310 320 330 340 350 KIAA13 GRGMAMASFYHARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI .::::::::::::::::::::::::.::::::::::::::::::::.:::::::: gi|750 SRGMAMASFYHARCLQLGLGITRDEATAKHYYSKACRLNPALADELRSLLIRQRI 300 310 320 330 340 >>gi|149742772|ref|XP_001490987.1| PREDICTED: similar to (348 aa) initn: 1973 init1: 1973 opt: 2170 Z-score: 2642.5 bits: 497.4 E(): 1.7e-138 Smith-Waterman score: 2170; 91.954% identity (98.851% similar) in 348 aa overlap (8-354:1-348) 10 20 30 40 50 KIAA13 NTHCRKRMKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTD-YTHANLVDKALQLLKE ::::::.:::::::.:.::::::: :::::.::::: :.::::::.::::::: gi|149 MKLTSENLPKNPFYTSLSQYAAKNPKFFQWRKEKTDHYSHANLVDRALQLLKE 10 20 30 40 50 60 70 80 90 100 110 KIAA13 RILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEK :: .::..::::::::::::::::::::::::::::::::::::::::::::::: :::: gi|149 RIRRGDAMAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTPDAEK 60 70 80 90 100 110 120 130 140 150 160 170 KIAA13 GVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKAS ::.:::::.::::::::::.::::::::::::::::::::.:.::::::.:::::::::: gi|149 GVEYMKKIVDSPCPKARHLQFAAAYNLGRAYYEGKGVKRSEEDAERLWLFAADNGNPKAS 120 130 140 150 160 170 180 190 200 210 220 230 KIAA13 VKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQ :::::.:::::::::::::::::::::::::::::::::::::::.:::::::::::::. gi|149 VKAQSILGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEAALH 180 190 200 210 220 230 240 250 260 270 280 290 KIAA13 CLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFI ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|149 CLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAKVTDCLPEFI 240 250 260 270 280 290 300 310 320 330 340 350 KIAA13 GRGMAMASFYHARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI .:::::::::::::::::::::.::.:::.:::::::::::::::::::.::::: gi|149 NRGMAMASFYHARCLQLGLGITKDEATAKQYYSKACRLNPALADELHSLVIRQRI 300 310 320 330 340 >>gi|73979482|ref|XP_848800.1| PREDICTED: similar to meg (348 aa) initn: 1952 init1: 1952 opt: 2150 Z-score: 2618.2 bits: 492.9 E(): 3.9e-137 Smith-Waterman score: 2150; 91.092% identity (97.701% similar) in 348 aa overlap (8-354:1-348) 10 20 30 40 50 KIAA13 NTHCRKRMKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTD-YTHANLVDKALQLLKE ::::::::::::::.:.:::.::: :::::.::::: :.: :::::::::::: gi|739 MKLTSEKLPKNPFYTSLSQYGAKNPKFFQWRKEKTDHYSHLNLVDKALQLLKE 10 20 30 40 50 60 70 80 90 100 110 KIAA13 RILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEK :: .::.::::::::::::::::::::::::::::::::::::::::::::::: .:.:: gi|739 RIRRGDALAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTPIDTEK 60 70 80 90 100 110 120 130 140 150 160 170 KIAA13 GVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKAS ::.:::::.::::::::::.::::::::::::::::::::.::::::::.:::::::::: gi|739 GVEYMKKIVDSPCPKARHLQFAAAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKAS 120 130 140 150 160 170 180 190 200 210 220 230 KIAA13 VKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQ :::::.:::::::::::.:::::::::::::::::::::::::::.:::::::::::::. gi|739 VKAQSILGLYYSTKEPKDLEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEAALE 180 190 200 210 220 230 240 250 260 270 280 290 KIAA13 CLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFI :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|739 CLREAAERGNVYAQGNLVEYYYKMKFFTKCVTFSKRIADYDEVHDIPMIAQVTDCLPEFI 240 250 260 270 280 290 300 310 320 330 340 350 KIAA13 GRGMAMASFYHARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI :::::::::::::::::::.:.::.::: :::::::::::::.::: ::::::: gi|739 IRGMAMASFYHARCLQLGLGVTKDEATAKLYYSKACRLNPALAEELHCLLIRQRI 300 310 320 330 340 >>gi|119918083|ref|XP_616622.3| PREDICTED: similar to LR (348 aa) initn: 1976 init1: 1976 opt: 2149 Z-score: 2617.0 bits: 492.7 E(): 4.6e-137 Smith-Waterman score: 2149; 91.092% identity (98.276% similar) in 348 aa overlap (8-354:1-348) 10 20 30 40 50 KIAA13 NTHCRKRMKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTD-YTHANLVDKALQLLKE :::::::::::: :.:.:..:::: : :::.::::: :.:::::::::::::: gi|119 MKLTSEKLPKNPSYTSLSHFAAKNAKVFQWRKEKTDHYSHANLVDKALQLLKE 10 20 30 40 50 60 70 80 90 100 110 KIAA13 RILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEK :: .:::.::::::::::::::::::::::::::::::::::::::::::::::. :.:: gi|119 RIRRGDTMAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTAADSEK 60 70 80 90 100 110 120 130 140 150 160 170 KIAA13 GVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKAS ::.:::::.:::::::::::::::::::::::::::::::..:::::::.:::::::::: gi|119 GVEYMKKIVDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSDKEAERLWLFAADNGNPKAS 120 130 140 150 160 170 180 190 200 210 220 230 KIAA13 VKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQ :::::.:::::::::::::::::::::::::::::::::::::::.:::::::::::::. gi|119 VKAQSILGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEAALH 180 190 200 210 220 230 240 250 260 270 280 290 KIAA13 CLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFI 240 250 260 270 280 290 300 310 320 330 340 350 KIAA13 GRGMAMASFYHARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI .:::::::::::::::::::.:.::.:::.:::::::::::::::::.:::.::: gi|119 SRGMAMASFYHARCLQLGLGVTKDEATAKRYYSKACRLNPALADELHTLLIHQRI 300 310 320 330 340 >>gi|119625054|gb|EAX04649.1| LRP2 binding protein, isof (321 aa) initn: 2097 init1: 2097 opt: 2097 Z-score: 2554.2 bits: 481.0 E(): 1.4e-133 Smith-Waterman score: 2097; 99.682% identity (100.000% similar) in 314 aa overlap (41-354:8-321) 20 30 40 50 60 70 KIAA13 TSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTDYTHANLVDKALQLLKERILKGDTLAYF :.:::::::::::::::::::::::::::: gi|119 MEFLTFLKSDYTHANLVDKALQLLKERILKGDTLAYF 10 20 30 80 90 100 110 120 130 KIAA13 LRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEKGVDYMKKILDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEKGVDYMKKILDS 40 50 60 70 80 90 140 150 160 170 180 190 KIAA13 PCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKASVKAQSMLGLYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKASVKAQSMLGLYY 100 110 120 130 140 150 200 210 220 230 240 250 KIAA13 STKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQCLREAAERGNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 STKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQCLREAAERGNV 160 170 180 190 200 210 260 270 280 290 300 310 KIAA13 YAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFIGRGMAMASFYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFIGRGMAMASFYH 220 230 240 250 260 270 320 330 340 350 KIAA13 ARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI :::::::::::::::::::::::::::::::::::::::::::: gi|119 ARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI 280 290 300 310 320 >>gi|148703618|gb|EDL35565.1| Lrp2 binding protein, isof (367 aa) initn: 1945 init1: 1848 opt: 2056 Z-score: 2503.5 bits: 471.8 E(): 9.6e-131 Smith-Waterman score: 2056; 84.789% identity (94.366% similar) in 355 aa overlap (1-354:15-367) 10 20 30 40 KIAA13 NTHCRKRMKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTDY-T . :: ::::.::::::::: :.::::::.:::::::::: :: gi|148 MTSVPGSSERQHWPDPHCGDRMKLSSEKLPKNPF--SLSQYAAKQQKFFQWKKEKPDYYL 10 20 30 40 50 50 60 70 80 90 100 KIAA13 HANLVDKALQLLKERILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGV :::::: :::.::::: .::..::::::::::::::::::: :::::.:::::: ::::: gi|148 HANLVDTALQFLKERIRRGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGV 60 70 80 90 100 110 110 120 130 140 150 160 KIAA13 MYYDGLGTTLDAEKGVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAER :::::::: .:::::.::.::::: ::.. ::::::::::::::.::::::::.::::: gi|148 MYYDGLGTIANAEKGVNYMRKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAER 120 130 140 150 160 170 170 180 190 200 210 220 KIAA13 LWLIAADNGNPKASVKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYL :::.:::::::::::::::.:::.:: ::::::::::.:::::::::.:::::::::::. gi|148 LWLLAADNGNPKASVKAQSILGLFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYF 180 190 200 210 220 230 230 240 250 260 270 280 KIAA13 YGQGIRQDTEAALQCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDI :::::::::.:::.:::::::::::::::.:::::::::::::::.:::::::::::::: gi|148 YGQGIRQDTDAALHCLREAAERGNVYAQGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDI 240 250 260 270 280 290 290 300 310 320 330 340 KIAA13 PMIAQVTDCLPEFIGRGMAMASFYHARCLQLGLGITRDETTAKHYYSKACRLNPALADEL ::::.::::::::: .:::::.:::.::::::::: .:: .:::::::::::::.::::: gi|148 PMIAHVTDCLPEFIIKGMAMAAFYHGRCLQLGLGIMKDEESAKHYYSKACRLNPTLADEL 300 310 320 330 340 350 350 KIAA13 HSLLIRQRI :::::.::: gi|148 HSLLIHQRI 360 >>gi|149021412|gb|EDL78875.1| similar to low density lip (367 aa) initn: 1939 init1: 1866 opt: 2053 Z-score: 2499.8 bits: 471.1 E(): 1.5e-130 Smith-Waterman score: 2053; 85.634% identity (94.366% similar) in 355 aa overlap (1-354:15-367) 10 20 30 40 KIAA13 NTHCRKRMKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTDY-T . .: . ::::::::::::: :.::::::.: :::::::: :: gi|149 MTSVPGSSARRNRSDPYCGNGMKLTSEKLPKNPF--SLSQYAAKQQTFFQWKKEKPDYYR 10 20 30 40 50 50 60 70 80 90 100 KIAA13 HANLVDKALQLLKERILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGV :::::: :::.::::: :::..::::::::::::::::::: :::::.:::::: ::::: gi|149 HANLVDTALQFLKERIRKGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGV 60 70 80 90 100 110 110 120 130 140 150 160 KIAA13 MYYDGLGTTLDAEKGVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAER ::::::::. :::::: :::::::: ::.. ::::::::::::::.::::::::.::::: gi|149 MYYDGLGTVADAEKGVGYMKKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAER 120 130 140 150 160 170 170 180 190 200 210 220 KIAA13 LWLIAADNGNPKASVKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYL ::: :::::::::::::::.:::.:: ::::.:::::.:::::::::::::::::::::. gi|149 LWLYAADNGNPKASVKAQSILGLFYSMKEPKDLEKAFFWHSEACGNGNLESQGALGLMYF 180 190 200 210 220 230 230 240 250 260 270 280 KIAA13 YGQGIRQDTEAALQCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDI :::::::::.:::.::::::::::::::: :::::::::::::::.:::::::::::::: gi|149 YGQGIRQDTDAALHCLREAAERGNVYAQGILVEYYYKMKFFTKCVSFSKRIADYDEVHDI 240 250 260 270 280 290 290 300 310 320 330 340 KIAA13 PMIAQVTDCLPEFIGRGMAMASFYHARCLQLGLGITRDETTAKHYYSKACRLNPALADEL ::::.:::::::::..::::::::.:::::::::::.::..:::::::::::::.::::: gi|149 PMIAHVTDCLPEFISKGMAMASFYYARCLQLGLGITKDEASAKHYYSKACRLNPTLADEL 300 310 320 330 340 350 350 KIAA13 HSLLIRQRI :::::.::: gi|149 HSLLIHQRI 360 354 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Wed Mar 4 10:46:14 2009 done: Wed Mar 4 10:51:05 2009 Total Scan time: 1443.650 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]