hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23381703/chunk_1/iprscan-20080501-23381703.nocrc
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Query sequence: KIAA1323
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00248                                                  75.3    7.5e-18   3
SM00184                                                  62.3    6.3e-14   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/3      21    51 ..     1    30 []    33.9  2.2e-05
SM00248    2/3      55    84 ..     1    30 []    31.0  0.00017
SM00248    3/3      88   119 ..     1    30 []    10.5  1.8e+02
SM00184    1/3     209   243 ..     1    23 []    16.6     0.24
SM00184    2/3     256   290 ..     1    23 []    16.5     0.24
SM00184    3/3     353   385 ..     1    23 []    29.1  0.00059

Alignments of top-scoring domains:
SM00248: domain 1 of 3, from 21 to 51: score 33.9, E = 2.2e-05
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                      dG+T+LHlAa n+++ev++lL+  g  ++++   
    KIAA1323    21    DGYTALHLAALNNHVEVAELLVHQGNaNLDI    51   

SM00248: domain 2 of 3, from 55 to 84: score 31.0, E = 0.00017
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      + +T+LHlA+e+ +  +v+lL+++ga +++   
    KIAA1323    55    NQQTALHLAVERQHTQIVRLLVRAGAKLDI    84   

SM00248: domain 3 of 3, from 88 to 119: score 10.5, E = 1.8e+02
                   *->dGrTpLHlAaengnlevvklLldkga..dina<-*
                      dG+TpLH A ++  l+ ++ L d    + ++a   
    KIAA1323    88    DGDTPLHEALRHHTLSQLRQLQDMQDvgKVDA    119  

SM00184: domain 1 of 3, from 209 to 243: score 16.6, E = 0.24
                   *->CpICle....pvvlpCgH..FCr.Ci.....CPlC<-*
                      C +C + ++++ + pCgH   C  C ++ ++C +C   
    KIAA1323   209    CMVCSDmkrdTLFGPCGHiaTCSlCSprvkkCLIC    243  

SM00184: domain 2 of 3, from 256 to 290: score 16.5, E = 0.24
                   *->CpICle....pvvlpCgH..FCr.Ci.....CPlC<-*
                      C +C +++  + + pCgH   C++C +  ++C +C   
    KIAA1323   256    CVVCSDkkaaVLFQPCGHmcACEnCAnlmkkCVQC    290  

SM00184: domain 3 of 3, from 353 to 385: score 29.1, E = 0.00059
                   *->CpICle...pvvlpCgH.FCr.Ci.....CPlC<-*
                      Cp+Cl++ + ++  CgH+ C+ C ++ ++CP+C   
    KIAA1323   353    CPVCLDrlkNMIFLCGHgTCQlCGdrmseCPIC    385  

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