# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh13878.fasta.huge -Q ../query/KIAA1323.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1323, 396 aa vs ./tmplib.24314 library 1987109 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 3.6264+/-0.00635; mu= 23.2082+/- 0.435 mean_var=168.5409+/-42.348, 0's: 0 Z-trim: 20 B-trim: 9 in 1/39 Lambda= 0.098792 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0957 ( 693 res) hj05670 ( 693) 272 51.0 2.5e-07 KIAA1876 ( 803 res) pf01162s1 ( 803) 195 40.1 0.00053 KIAA0379 ( 1059 res) hh00505s1 (1059) 187 39.3 0.0013 KIAA1250 ( 1777 res) pf01137 (1777) 174 37.9 0.0057 KIAA1728 ( 1644 res) pg00239 (1644) 168 37.0 0.01 >>KIAA0957 ( 693 res) hj05670 (693 aa) initn: 358 init1: 159 opt: 272 Z-score: 223.4 bits: 51.0 E(): 2.5e-07 Smith-Waterman score: 272; 32.039% identity (59.223% similar) in 206 aa overlap (15-217:102-298) 10 20 30 40 KIAA13 AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQ .:.. :: :::: :. .. . :.:::. KIAA09 QDDGDQTALHRATVVGNTEIIAALIHEGCALDRQDKDGNTALHEASWHGFSQSAKLLVKA 80 90 100 110 120 130 50 60 70 80 90 100 KIAA13 GNANLDIQNVNQQTALHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQ : ::. .: .:::::: . .:.: .:.:. ::.. :.... ::: :: : :.. :: KIAA09 G-ANVLAKNKAGNTALHLACQNSHSQSTRVLLLAGSRADLKNNAGDTCLHVAARYNHLSI 140 150 160 170 180 190 110 120 130 140 150 160 KIAA13 LRQLQDMQDVGKVDAAWEPSKNTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNKKGQ .: : . .: . . ..: .. . . .:: .: .: ::: .: :. :: KIAA09 IRLL--LTAFCSVHEKNQAGDTALHVAAALN--HKK----VAKILLEAGADTTIVNNAGQ 200 210 220 230 240 170 180 190 200 210 220 KIAA13 SPLDLC---PDPNLCKALAKCHKEKVSGQVGSRSPSMISNDSETLEECMVCSDMKRDTLF .::. .:.. :.: . .::. : . .. :. :: . : : KIAA09 TPLETARYHNNPEVALLLTKAPQGSVSAGDTPSSEQAVARKEEAREEFLSASPEPRAKDD 250 260 270 280 290 300 230 240 250 260 270 280 KIAA13 GPCGHIATCSLCSPRVKKCLICKEQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCA KIAA09 RRRKSRPKVSAFSDPTPPADQQPGHQKNLHAHNHPKKRNRHRCSSPPPPHEFRAYQLYTL 310 320 330 340 350 360 >>KIAA1876 ( 803 res) pf01162s1 (803 aa) initn: 363 init1: 173 opt: 195 Z-score: 163.6 bits: 40.1 E(): 0.00053 Smith-Waterman score: 249; 26.019% identity (52.665% similar) in 319 aa overlap (24-320:394-691) 10 20 30 40 50 KIAA13 AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQN . :: :: .::.. ..::. : ::.: . KIAA18 SARQGELQKVLLMLVDGIDPNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG-ANIDTCS 370 380 390 400 410 420 60 70 80 90 100 110 KIAA13 VNQQTALHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTPLHEALR--HHTLSQLRQLQDM .:.: : :.: .: . :. :..::: .: .: .:.: :: : . :. . : . . KIAA18 EDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 430 440 450 460 470 480 120 130 140 150 160 KIAA13 QDVG-KVDAAWEPSKNTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNKKGQ-----S .::. . :..: : .: : . . .... .: ..:.:..::... . . KIAA18 MDVNCQDDGGWTP----MIW------ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWA 490 500 510 520 530 170 180 190 200 210 220 KIAA13 PLDLCPDPNLCKALAKCHKEKVSGQVGSRSPSMISNDSETLEECMVCSDMKRD---TLFG .. : : ::: . :. . . :: :. :. .:.: ..:: :: . KIAA18 AFSGCVDIAEILLAAKCDLHAVN--IHGDSPLHIAA-RENRYDCVVLF-LSRDSDVTLKN 540 550 560 570 580 230 240 250 260 270 KIAA13 PCGHIAT-CSLCSPRVKKCLICKEQVQS----RTKIEECVVCSD--KKAAVLFQPCGHMC :. :. . .: . : .. .:. : . : .: : . . :: . KIAA18 KEGETPLQCASLNSQVWSALQMSKALQDSAPDRPSPVERIVSRDIARGYERIPIPCVNAV 590 600 610 620 630 640 280 290 300 310 320 330 KIAA13 ACENCANLMK----KCVQCRAVVERRVPFIMCCGGKSSEDATDDISSGNIPVLQKDKDNT : : . .: .:: ..: . .. : :: ::.: KIAA18 DSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYC------VCIDDCSSSNCMCGQLSMRCW 650 660 670 680 690 700 340 350 360 370 380 390 KIAA13 NVNADVQKLQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIER KIAA18 YDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSL 710 720 730 740 750 760 >>KIAA0379 ( 1059 res) hh00505s1 (1059 aa) initn: 627 init1: 176 opt: 187 Z-score: 156.7 bits: 39.3 E(): 0.0013 Smith-Waterman score: 215; 31.609% identity (59.770% similar) in 174 aa overlap (22-169:146-318) 10 20 30 40 50 KIAA13 AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDI : :::: ::...: :...::. .: ::.. KIAA03 PLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRG-ANINA 120 130 140 150 160 170 60 70 80 90 100 110 KIAA13 QNVNQQTALHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQLRQLQDM . ... :.: :. : ..:.::: ::.. .:: . :::: : .: .. : :. KIAA03 FDKKDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDL 180 190 200 210 220 230 120 130 140 KIAA13 Q-DVGKVDA--------AWEPSKNTLIMGLGTQGA------EKK------SAASIA---C :... .: : ...... : :: :: .::: : KIAA03 GVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLHFAAASTHGALC 240 250 260 270 280 290 150 160 170 180 190 200 KIAA13 F--LAANGADLSIRNKKGQSPLDLCPDPNLCKALAKCHKEKVSGQVGSRSPSMISNDSET . :..::::.....: :..:: . KIAA03 LELLVGNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAAR 300 310 320 330 340 350 >>KIAA1250 ( 1777 res) pf01137 (1777 aa) initn: 411 init1: 109 opt: 174 Z-score: 145.2 bits: 37.9 E(): 0.0057 Smith-Waterman score: 186; 28.169% identity (57.277% similar) in 213 aa overlap (22-230:275-467) 10 20 30 40 50 KIAA13 AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDI : :.: :. ..:::... :. : :..:: KIAA12 ALMIASKEGHTEIVQDLLDAGTYVNIPDRSGDTVLIGAVRGGHVEIVRALL-QKYADIDI 250 260 270 280 290 300 60 70 80 90 100 110 KIAA13 QNVNQQTALHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQLRQLQDM .. ...:::. :::. .. .:: ... . .: :::.::: .: . ... .. : : KIAA12 RGQDNKTALYWAVEKGNATMVRDILQCNPDTEICTKDGETPLIKATKMRNIEVVELLLDK 310 320 330 340 350 360 120 130 140 150 160 KIAA13 QDVGKVDAAWEPSKNTLIMGLGTQGAEKKSAASIACFLAANGAD--LSIR-NKKGQSPLD .::.:. .:. . .. .: .: .: .: : : : : :: :..: . KIAA12 G--AKVSAV--DKKGDTPLHIAIRGRSRK----LAELLLRNPKDGRLLYRPNKAGETPYN 370 380 390 400 410 170 180 190 200 210 220 KIAA13 LCPDPNLCKALAKCHKEKVSGQV-GSRSPSMISNDSETLEECMVCSDMKRDTLFGPCGHI . : :. :.... :. :.: : .:.. : . : . : : : . KIAA12 I--D---CS-----HQKSILTQIFGARHLSPTETDGDMLGYDLYSSALA-DILSEPTMQP 420 430 440 450 460 230 240 250 260 270 280 KIAA13 ATCSLCSPRVKKCLICKEQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCANLMKKC : KIAA12 PICVGLYAQWGSGKSFLLKKLEDEMKTFAGQQIEPLFQFSWLIVFLTLLLCGGLGLLFAF 470 480 490 500 510 520 >>KIAA1728 ( 1644 res) pg00239 (1644 aa) initn: 280 init1: 98 opt: 168 Z-score: 140.8 bits: 37.0 E(): 0.01 Smith-Waterman score: 169; 33.113% identity (62.252% similar) in 151 aa overlap (22-169:862-1000) 10 20 30 40 50 KIAA13 AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDI : ::: :: ...:: :::. .: : . KIAA17 ASMGHSSVVQCLLGMEKEHEVEVNGTDTLWGETALTAAAGRGKLEVCELLLGHGAA---V 840 850 860 870 880 60 70 80 90 100 KIAA13 QNVNQQTA--LHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQLRQLQ . .:.. . : :... : ::::::.. : ....::.: ::: : . :: .. : KIAA17 SRTNRRGVPPLFCAARQGHWQIVRLLLERGCDVNLSDKQGRTPLMVAACEGHLSTVEFL- 890 900 910 920 930 940 110 120 130 140 150 160 KIAA13 DMQDVGKVDAAWEPSKNTLIMGLGTQG-AEKKSAASIACFLAANGADLSIRNKKGQSPLD ..: : .:. ::.. . : :. ... .:. .:: .. .:.:..::: KIAA17 ----LSKGAALSSLDKE----GLSALSWACLKGHRAVVQYLVEEGAAIDQTDKNGRTPLD 950 960 970 980 990 170 180 190 200 210 220 KIAA13 LCPDPNLCKALAKCHKEKVSGQVGSRSPSMISNDSETLEECMVCSDMKRDTLFGPCGHIA : KIAA17 LAAFYGDAETVLYLVEKGAVIEHVDHSGMRPLDRAIGCRNTSVVVALLRKGAKLGNAAWA 1000 1010 1020 1030 1040 1050 396 residues in 1 query sequences 1987109 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:17:47 2008 done: Thu Dec 18 15:17:47 2008 Total Scan time: 0.390 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]