hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23314487/chunk_1/iprscan-20080501-23314487.nocrc
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Query sequence: KIAA1319
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF01576.9.fs  Myosin tail                                55.3    2.9e-15   1
PF07716.5.fs  Basic region leucine zipper                32.0    8.9e-08   8
PF02370.7.ls  M protein repeat                           28.2    2.6e-05   9

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF02809.10.ls   2/2     917   934 ..     1    18 []     5.5      5.4
PF01576.9.fs    1/1     972  1142 ..   664   839 ..    55.3  2.9e-15

Alignments of top-scoring domains:
PF02809.10.ls: domain 2 of 2, from 917 to 934: score 5.5, E = 5.4
                   *->mdEEedLqlALalSlqea<-*
                       dE + L++AL+ S++e    
    KIAA1319   917    QDEIQRLRQALQASQAER    934  

PF01576.9.fs: domain 1 of 1, from 972 to 1142: score 55.3, E = 2.9e-15
                   *->LEgelaalqsDLDEavnElkaAeERakKAqaDaarLaeELrqEQehs
                      LE +++ l+ +LDE+ n  +   +R+++   ++ +L +EL qE++  
    KIAA1319   972    LEEKVSRLETELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSAR 1018 

                   qklErlRKqLEsqvKeLqvRLdEaEaaAlkgGKkvIqKLEaRVReLEaEL
                   q lE ++++LE+q+K+L+ RL+ +E ++     +  + LE+    L++ L
    KIAA1319  1019 QDLECDKISLERQNKDLKTRLASSEGFQKPS--ASLSQLESQNQLLQERL 1066 

                   dgEqRRhaetqKnlRKaeRrvKELqfQvEEDkKnlerlQDLvDKLqaKiK
                    +E+R++   q ++RK eR+vKEL+ Q+E+++ ++    D+ D L  ++K
    KIAA1319  1067 QAEEREKTVLQSTNRKLERKVKELSIQIEDERQHVN---DQKDQLSLRVK 1113 

                   tyKRQlEEaEEiaqinlsKyRkaQreLEd<-*
                   ++KRQ++EaEE+  +     +kaQre E+   
    KIAA1319  1114 ALKRQVDEAEEEIERLDGLRKKAQREVEE    1142 

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