# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh13117.fasta.huge -Q ../query/KIAA1317.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1317, 435 aa vs ./tmplib.24314 library 1987070 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.0827+/-0.00513; mu= 13.7312+/- 0.351 mean_var=99.1464+/-23.405, 0's: 0 Z-trim: 5 B-trim: 0 in 0/40 Lambda= 0.128806 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1778 ( 341 res) pg00707 ( 341) 599 121.3 9.5e-29 KIAA0176 ( 265 res) ha03941 ( 265) 196 46.2 2.8e-06 >>KIAA1778 ( 341 res) pg00707 (341 aa) initn: 1086 init1: 515 opt: 599 Z-score: 608.0 bits: 121.3 E(): 9.5e-29 Smith-Waterman score: 1033; 55.960% identity (73.510% similar) in 302 aa overlap (24-286:42-341) 10 20 30 40 50 KIAA13 QQQKKGTMALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLISI :: : ::..:::::::::: ::. :..:. KIAA17 GHLSVMALADSTRGLPNGGGGGGGSGSSSSSAEPPLFPDIVELNVGGQVYVTRRCTVVSV 20 30 40 50 60 70 60 70 80 90 100 110 KIAA13 PHSLLWKMFSPKRDTANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRL : ::::.::. .. ..::.:::::::.:::::::::::::::: :.::::.:::..:: KIAA17 PDSLLWRMFTQQQP--QELARDSKGRFFLDRDGFLFRYILDYLRDLQLVLPDYFPERSRL 80 90 100 110 120 120 130 140 150 KIAA13 KREAEYFQLPDLVKLL-TPDEIKQSP--------------DEFCHSDF------EDASQG .::::::.::.::. : .:.. .: ::. . : :: : KIAA17 QREAEYFELPELVRRLGAPQQPGPGPPPSRRGVHKEGSLGDELLPLGYSEPEQQEGASAG 130 140 150 160 170 180 160 170 180 190 KIAA13 SDTR----------------ICPPSSLLPADRKWGFITVGYRGSCTLGREGQADAKFRRV . . . ::. : ..:. :.::.::::: :.::..::::::::: KIAA17 APSPTLELASRSPSGGAAGPLLTPSQSLDGSRRSGYITIGYRGSYTIGRDAQADAKFRRV 190 200 210 220 230 240 200 210 220 230 240 250 KIAA13 PRILVCGRISLAKEVFGETLNESRDPDRAPERYTSRFYLKFKHLERAFDMLSECGFHMVA :: :::. ::::::::.:::::::::: :::::::.::::. ::.::: ::: :::::: KIAA17 ARITVCGKTSLAKEVFGDTLNESRDPDRPPERYTSRYYLKFNFLEQAFDKLSESGFHMVA 250 260 270 280 290 300 260 270 280 290 300 310 KIAA13 CNSSVTASFINQ--YTDDKIWSSYTEYVFYREPSRWSPSHCDCCCKNGKGDKEGESGTSC :.:. : .: .. ..::::.::::::: :: KIAA17 CSSTGTCAFASSTDQSEDKIWTSYTEYVFCRE 310 320 330 340 320 330 340 350 360 370 KIAA13 NDLSTSSCDSQSEASSPQETVICGPVTRQTNIQTLDRPIKKGPVQLIQQSEMRRKSDLLR >>KIAA0176 ( 265 res) ha03941 (265 aa) initn: 150 init1: 111 opt: 196 Z-score: 204.6 bits: 46.2 E(): 2.8e-06 Smith-Waterman score: 196; 30.061% identity (60.736% similar) in 163 aa overlap (34-190:76-231) 10 20 30 40 50 60 KIAA13 KKGTMALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFS :.::::: . : ..:: :.:.: .. KIAA01 HGRPAAAVAQRLEPGPGPPERAGGGGAARWVRLNVGGTYFVTTRQTLGREPKSFLCRLCC 50 60 70 80 90 100 70 80 90 100 110 120 KIAA13 PKRDTANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLP ..: : :: : ..:::: : ::.::: .... .. :.: :. :::.... KIAA01 -QEDPELDSDKDETGAYLIDRDPTYFGPILNYLRHGKLIITKELAEEGVLE-EAEFYNIA 110 120 130 140 150 160 130 140 150 160 170 KIAA13 DLVKLLTPDEIKQSPDEFCHSDFEDAS---QGSDTRICPPSSLLPADRKWGF---ITVGY .::.:. ..:... .. .. . . : .. .. : . .: : : :..: KIAA01 SLVRLVK-ERIRDNENRTSQGPVKHVYRVLQCQEEELTQMVSTM-SD-GWKFEQLISIG- 170 180 190 200 210 180 190 200 210 220 230 KIAA13 RGSCTLGREGQADAKFRRVPRILVCGRISLAKEVFGETLNESRDPDRAPERYTSRFYLKF .: . : : ::. KIAA01 -SSYNYGNEDQAEFLCVVSRELNNSTNGIVIEPSEKAKILQERGSRM 220 230 240 250 260 435 residues in 1 query sequences 1987070 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:17:32 2008 done: Thu Dec 18 15:17:32 2008 Total Scan time: 0.410 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]