# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/fh12154.fasta.nr -Q ../query/KIAA1313.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1313, 398 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826848 sequences Expectation_n fit: rho(ln(x))= 5.1943+/-0.000186; mu= 10.1882+/- 0.010 mean_var=76.8412+/-14.857, 0's: 44 Z-trim: 48 B-trim: 334 in 1/66 Lambda= 0.146311 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|57209120|emb|CAI41393.1| protocadherin 19 [Homo ( 602) 2674 574.0 3.1e-161 gi|119623210|gb|EAX02805.1| protocadherin 19, isof ( 996) 2674 574.1 4.5e-161 gi|168273220|dbj|BAG10449.1| protocadherin-19 prec (1101) 2674 574.2 4.9e-161 gi|157426845|ref|NP_065817.2| protocadherin 19 iso (1100) 2657 570.6 5.9e-160 gi|51476286|emb|CAH18133.1| hypothetical protein [ ( 601) 2652 569.3 7.7e-160 gi|194228094|ref|XP_001914715.1| PREDICTED: protoc (1170) 2635 566.0 1.5e-158 gi|57209121|emb|CAI41394.1| protocadherin 19 [Homo ( 649) 2597 557.7 2.6e-156 gi|73620979|sp|Q8TAB3.3|PCD19_HUMAN RecName: Full= (1148) 2597 557.9 4e-156 gi|194680343|ref|XP_602429.4| PREDICTED: similar t (1098) 2567 551.6 3.1e-154 gi|57112567|ref|XP_549133.1| PREDICTED: similar to (1098) 2566 551.4 3.6e-154 gi|109131556|ref|XP_001091349.1| PREDICTED: protoc (1683) 2564 551.1 6.6e-154 gi|123225931|emb|CAM21150.1| protocadherin 19 [Mus ( 641) 2507 538.7 1.3e-150 gi|149055462|gb|EDM07046.1| protocadherin 19 (pred (1098) 2508 539.1 1.7e-150 gi|148688470|gb|EDL20417.1| mCG11037, isoform CRA_ (1098) 2507 538.9 2e-150 gi|110002501|gb|AAI18530.1| Pcdh19 protein [Mus mu ( 992) 2490 535.3 2.2e-149 gi|157426851|ref|NP_001098716.1| protocadherin 19 (1097) 2490 535.3 2.4e-149 gi|62667172|ref|XP_228429.3| PREDICTED: similar to (1145) 2430 522.7 1.6e-145 gi|123225930|emb|CAM21149.1| protocadherin 19 [Mus (1145) 2429 522.5 1.9e-145 gi|73621358|sp|Q80TF3.2|PCD19_MOUSE RecName: Full= (1145) 2429 522.5 1.9e-145 gi|119623209|gb|EAX02804.1| protocadherin 19, isof ( 350) 2360 507.5 1.8e-141 gi|149640037|ref|XP_001512989.1| PREDICTED: simila (1098) 2220 478.3 3.4e-132 gi|114689417|ref|XP_001139152.1| PREDICTED: simila ( 327) 1863 402.6 6.6e-110 gi|143330542|gb|ABO93197.1| protocadherin 19 [Gall (1086) 1839 397.9 5.5e-108 gi|171362750|dbj|BAG15887.1| protocadherin19 isofo ( 800) 1800 389.6 1.3e-105 gi|120537643|gb|AAI29244.1| Wu:fc83e05 protein [Da (1078) 1800 389.7 1.7e-105 gi|189528164|ref|XP_683370.3| PREDICTED: wu:fc83e0 ( 836) 1793 388.1 3.8e-105 gi|194045043|ref|XP_001924405.1| PREDICTED: simila ( 793) 1294 282.8 1.9e-73 gi|171362748|dbj|BAG15886.1| protocadherin19 isofo ( 729) 1040 229.1 2.4e-57 gi|109120884|ref|XP_001086028.1| PREDICTED: simila (1159) 772 172.7 3.7e-40 gi|194040722|ref|XP_001927302.1| PREDICTED: protoc (1162) 770 172.3 4.9e-40 gi|114649929|ref|XP_522770.2| PREDICTED: protocadh (1159) 768 171.9 6.6e-40 gi|118572683|sp|O14917.2|PCD17_HUMAN RecName: Full (1159) 768 171.9 6.6e-40 gi|119904424|ref|XP_587707.3| PREDICTED: similar t (1161) 768 171.9 6.6e-40 gi|57242937|gb|AAH89004.1| Protocadherin 17 [Mus m (1157) 765 171.2 1e-39 gi|148703803|gb|EDL35750.1| protocadherin 17 [Mus (1193) 765 171.2 1e-39 gi|149050059|gb|EDM02383.1| protocadherin 17 (pred (1208) 765 171.3 1.1e-39 gi|126337632|ref|XP_001362465.1| PREDICTED: simila (1167) 764 171.0 1.2e-39 gi|149730268|ref|XP_001493651.1| PREDICTED: simila (1161) 762 170.6 1.6e-39 gi|47226195|emb|CAG08342.1| unnamed protein produc ( 924) 737 165.3 5.2e-38 gi|125829617|ref|XP_689835.2| PREDICTED: protocadh (1137) 715 160.7 1.5e-36 gi|118084809|ref|XP_417021.2| PREDICTED: similar t (1174) 677 152.7 4e-34 gi|47227018|emb|CAG05910.1| unnamed protein produc ( 891) 416 97.5 1.3e-17 gi|119572446|gb|EAW52061.1| protocadherin 17, isof ( 889) 341 81.6 7.3e-13 gi|2599502|gb|AAB84144.1| protocadherin 68 [Homo s ( 889) 341 81.6 7.3e-13 gi|119572444|gb|EAW52059.1| protocadherin 17, isof ( 899) 334 80.2 2.1e-12 gi|47230572|emb|CAF99765.1| unnamed protein produc ( 234) 261 64.3 3.2e-08 gi|74227349|dbj|BAE21761.1| unnamed protein produc ( 121) 248 61.3 1.3e-07 gi|209573159|sp|A7MB46.1|PCD18_BOVIN RecName: Full (1134) 247 61.9 8.3e-07 gi|194386128|dbj|BAG59628.1| unnamed protein produ ( 315) 238 59.5 1.2e-06 gi|194391346|dbj|BAG60791.1| unnamed protein produ ( 346) 238 59.6 1.3e-06 >>gi|57209120|emb|CAI41393.1| protocadherin 19 [Homo sap (602 aa) initn: 2674 init1: 2674 opt: 2674 Z-score: 3050.9 bits: 574.0 E(): 3.1e-161 Smith-Waterman score: 2674; 100.000% identity (100.000% similar) in 398 aa overlap (1-398:205-602) 10 20 30 KIAA13 KRDNKEIRTYNCRIAEYSYGHQKKSSKKKK :::::::::::::::::::::::::::::: gi|572 SVNLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKK 180 190 200 210 220 230 40 50 60 70 80 90 KIAA13 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT 240 250 260 270 280 290 100 110 120 130 140 150 KIAA13 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE 300 310 320 330 340 350 160 170 180 190 200 210 KIAA13 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE 360 370 380 390 400 410 220 230 240 250 260 270 KIAA13 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK 420 430 440 450 460 470 280 290 300 310 320 330 KIAA13 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS 480 490 500 510 520 530 340 350 360 370 380 390 KIAA13 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV 540 550 560 570 580 590 KIAA13 KRLKDIVL :::::::: gi|572 KRLKDIVL 600 >>gi|119623210|gb|EAX02805.1| protocadherin 19, isoform (996 aa) initn: 2674 init1: 2674 opt: 2674 Z-score: 3047.9 bits: 574.1 E(): 4.5e-161 Smith-Waterman score: 2674; 100.000% identity (100.000% similar) in 398 aa overlap (1-398:599-996) 10 20 30 KIAA13 KRDNKEIRTYNCRIAEYSYGHQKKSSKKKK :::::::::::::::::::::::::::::: gi|119 SVNLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKK 570 580 590 600 610 620 40 50 60 70 80 90 KIAA13 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT 630 640 650 660 670 680 100 110 120 130 140 150 KIAA13 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE 690 700 710 720 730 740 160 170 180 190 200 210 KIAA13 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE 750 760 770 780 790 800 220 230 240 250 260 270 KIAA13 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK 810 820 830 840 850 860 280 290 300 310 320 330 KIAA13 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS 870 880 890 900 910 920 340 350 360 370 380 390 KIAA13 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV 930 940 950 960 970 980 KIAA13 KRLKDIVL :::::::: gi|119 KRLKDIVL 990 >>gi|168273220|dbj|BAG10449.1| protocadherin-19 precurso (1101 aa) initn: 2674 init1: 2674 opt: 2674 Z-score: 3047.3 bits: 574.2 E(): 4.9e-161 Smith-Waterman score: 2674; 100.000% identity (100.000% similar) in 398 aa overlap (1-398:704-1101) 10 20 30 KIAA13 KRDNKEIRTYNCRIAEYSYGHQKKSSKKKK :::::::::::::::::::::::::::::: gi|168 SVNLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKK 680 690 700 710 720 730 40 50 60 70 80 90 KIAA13 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT 740 750 760 770 780 790 100 110 120 130 140 150 KIAA13 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE 800 810 820 830 840 850 160 170 180 190 200 210 KIAA13 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE 860 870 880 890 900 910 220 230 240 250 260 270 KIAA13 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK 920 930 940 950 960 970 280 290 300 310 320 330 KIAA13 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS 980 990 1000 1010 1020 1030 340 350 360 370 380 390 KIAA13 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV 1040 1050 1060 1070 1080 1090 KIAA13 KRLKDIVL :::::::: gi|168 KRLKDIVL 1100 >>gi|157426845|ref|NP_065817.2| protocadherin 19 isoform (1100 aa) initn: 1728 init1: 1728 opt: 2657 Z-score: 3027.9 bits: 570.6 E(): 5.9e-160 Smith-Waterman score: 2657; 99.749% identity (99.749% similar) in 398 aa overlap (1-398:704-1100) 10 20 30 KIAA13 KRDNKEIRTYNCRIAEYSYGHQKKSSKKKK :::::::::::::::::::::::::::::: gi|157 SVNLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKK 680 690 700 710 720 730 40 50 60 70 80 90 KIAA13 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT 740 750 760 770 780 790 100 110 120 130 140 150 KIAA13 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: gi|157 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSS-TFKDLE 800 810 820 830 840 850 160 170 180 190 200 210 KIAA13 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE 860 870 880 890 900 910 220 230 240 250 260 270 KIAA13 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK 920 930 940 950 960 970 280 290 300 310 320 330 KIAA13 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS 980 990 1000 1010 1020 1030 340 350 360 370 380 390 KIAA13 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV 1040 1050 1060 1070 1080 1090 KIAA13 KRLKDIVL :::::::: gi|157 KRLKDIVL 1100 >>gi|51476286|emb|CAH18133.1| hypothetical protein [Homo (601 aa) initn: 1728 init1: 1728 opt: 2652 Z-score: 3025.8 bits: 569.3 E(): 7.7e-160 Smith-Waterman score: 2652; 99.497% identity (99.749% similar) in 398 aa overlap (1-398:205-601) 10 20 30 KIAA13 KRDNKEIRTYNCRIAEYSYGHQKKSSKKKK :::::::::::::::::::::::::::::: gi|514 SVNLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKK 180 190 200 210 220 230 40 50 60 70 80 90 KIAA13 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|514 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT 240 250 260 270 280 290 100 110 120 130 140 150 KIAA13 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE :::::::::::::::::::::::::::.::::::::::::::::::::::::: :::::: gi|514 RNTSANHIYHHSFNSQGPQQPDLIINGAPLPETENYSFDSNYVNSRAHLIKSS-TFKDLE 300 310 320 330 340 350 160 170 180 190 200 210 KIAA13 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|514 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE 360 370 380 390 400 410 220 230 240 250 260 270 KIAA13 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|514 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK 420 430 440 450 460 470 280 290 300 310 320 330 KIAA13 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|514 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS 480 490 500 510 520 530 340 350 360 370 380 390 KIAA13 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|514 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV 540 550 560 570 580 590 KIAA13 KRLKDIVL :::::::: gi|514 KRLKDIVL 600 >>gi|194228094|ref|XP_001914715.1| PREDICTED: protocadhe (1170 aa) initn: 2635 init1: 2635 opt: 2635 Z-score: 3002.5 bits: 566.0 E(): 1.5e-158 Smith-Waterman score: 2635; 97.487% identity (99.497% similar) in 398 aa overlap (1-398:773-1170) 10 20 30 KIAA13 KRDNKEIRTYNCRIAEYSYGHQKKSSKKKK :::::::::::::::::::::::::::::: gi|194 SVNLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKK 750 760 770 780 790 800 40 50 60 70 80 90 KIAA13 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT 810 820 830 840 850 860 100 110 120 130 140 150 KIAA13 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE 870 880 890 900 910 920 160 170 180 190 200 210 KIAA13 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE 930 940 950 960 970 980 220 230 240 250 260 270 KIAA13 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK :::::::::::::::::: ::::::::::.:::::::::::::::::::::::::::::: gi|194 CRILGHSDRCWMPRNPMPTRSKSPEHVRNVIALSIEATAADVEAYDDCGPTKRTFATFGK 990 1000 1010 1020 1030 1040 280 290 300 310 320 330 KIAA13 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS :::::::::::::::.:::::::::::::..:::::::::::::::::::::: :::::: gi|194 DVSDHPAEERPTLKGRRTVDVTICSPKVNGAIREAGNGCEAISPVTSPLHLKSPLPTKPS 1050 1060 1070 1080 1090 1100 340 350 360 370 380 390 KIAA13 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV ::::.::::::::::::::::::::.:::::::::::::::::::.:::::::.:::::: gi|194 VSYTVALAPPARDLEQYVNNVNNGPSRPSEAEPRGADSEKVMHEVNPILKEGRDKESPGV 1110 1120 1130 1140 1150 1160 KIAA13 KRLKDIVL :::::::: gi|194 KRLKDIVL 1170 >>gi|57209121|emb|CAI41394.1| protocadherin 19 [Homo sap (649 aa) initn: 2660 init1: 2589 opt: 2597 Z-score: 2962.6 bits: 557.7 E(): 2.6e-156 Smith-Waterman score: 2597; 97.236% identity (98.744% similar) in 398 aa overlap (1-398:252-649) 10 20 30 KIAA13 KRDNKEIRTYNCRIAEYSYGHQKKSSKKKK :. .... . :::::::::::::::::: gi|572 ITCLLGCFIKGQNSKCLHCISVSPISEEQDKKTEEKVSLRGKRIAEYSYGHQKKSSKKKK 230 240 250 260 270 280 40 50 60 70 80 90 KIAA13 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT 290 300 310 320 330 340 100 110 120 130 140 150 KIAA13 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE 350 360 370 380 390 400 160 170 180 190 200 210 KIAA13 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE 410 420 430 440 450 460 220 230 240 250 260 270 KIAA13 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK 470 480 490 500 510 520 280 290 300 310 320 330 KIAA13 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS 530 540 550 560 570 580 340 350 360 370 380 390 KIAA13 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV 590 600 610 620 630 640 KIAA13 KRLKDIVL :::::::: gi|572 KRLKDIVL >>gi|73620979|sp|Q8TAB3.3|PCD19_HUMAN RecName: Full=Prot (1148 aa) initn: 2660 init1: 2589 opt: 2597 Z-score: 2959.2 bits: 557.9 E(): 4e-156 Smith-Waterman score: 2597; 97.236% identity (98.744% similar) in 398 aa overlap (1-398:751-1148) 10 20 30 KIAA13 KRDNKEIRTYNCRIAEYSYGHQKKSSKKKK :. .... . :::::::::::::::::: gi|736 ITCLLGCFIKGQNSKCLHCISVSPISEEQDKKTEEKVSLRGKRIAEYSYGHQKKSSKKKK 730 740 750 760 770 780 40 50 60 70 80 90 KIAA13 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|736 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT 790 800 810 820 830 840 100 110 120 130 140 150 KIAA13 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|736 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE 850 860 870 880 890 900 160 170 180 190 200 210 KIAA13 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|736 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE 910 920 930 940 950 960 220 230 240 250 260 270 KIAA13 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|736 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK 970 980 990 1000 1010 1020 280 290 300 310 320 330 KIAA13 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|736 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS 1030 1040 1050 1060 1070 1080 340 350 360 370 380 390 KIAA13 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|736 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV 1090 1100 1110 1120 1130 1140 KIAA13 KRLKDIVL :::::::: gi|736 KRLKDIVL >>gi|194680343|ref|XP_602429.4| PREDICTED: similar to pr (1098 aa) initn: 2588 init1: 2311 opt: 2567 Z-score: 2925.3 bits: 551.6 E(): 3.1e-154 Smith-Waterman score: 2567; 95.226% identity (98.241% similar) in 398 aa overlap (1-398:704-1098) 10 20 30 KIAA13 KRDNKEIRTYNCRIAEYSYGHQKKSSKKKK :::::::::::::::::::::::::::::: gi|194 SVNLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKK 680 690 700 710 720 730 40 50 60 70 80 90 KIAA13 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT 740 750 760 770 780 790 100 110 120 130 140 150 KIAA13 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE :::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::: gi|194 RNTSANHIYHHSFNSQGPQQPDLIINGMPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE 800 810 820 830 840 850 160 170 180 190 200 210 KIAA13 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|194 GNSLKDSGHEESDQTDSEHDIQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE 860 870 880 890 900 910 220 230 240 250 260 270 KIAA13 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK :::::::::::::::::: :::::::::::.:::::::::::::::::::::::::::: gi|194 CRILGHSDRCWMPRNPMPTCSKSPEHVRNIITLSIEATAADVEAYDDCGPTKRTFATFGK 920 930 940 950 960 970 280 290 300 310 320 330 KIAA13 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS :::::::::::::::.:::::: :::::::.:::::::::::::::::::::: :::::: gi|194 DVSDHPAEERPTLKGRRTVDVTTCSPKVNSAIREAGNGCEAISPVTSPLHLKSPLPTKPS 980 990 1000 1010 1020 1030 340 350 360 370 380 390 KIAA13 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV ::::.::::::::::::: ::::.:::::::::::.:::.:::.:::::::.:::::: gi|194 VSYTVALAPPARDLEQYV---NNGPSRPSEAEPRGADGEKVVHEVNPILKEGRDKESPGV 1040 1050 1060 1070 1080 1090 KIAA13 KRLKDIVL ::::::.: gi|194 KRLKDIIL >>gi|57112567|ref|XP_549133.1| PREDICTED: similar to Pro (1098 aa) initn: 2582 init1: 2305 opt: 2566 Z-score: 2924.1 bits: 551.4 E(): 3.6e-154 Smith-Waterman score: 2566; 95.477% identity (98.241% similar) in 398 aa overlap (1-398:704-1098) 10 20 30 KIAA13 KRDNKEIRTYNCRIAEYSYGHQKKSSKKKK :::::::::::::::::::::::::::::: gi|571 SVNLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKK 680 690 700 710 720 730 40 50 60 70 80 90 KIAA13 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT 740 750 760 770 780 790 100 110 120 130 140 150 KIAA13 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE 800 810 820 830 840 850 160 170 180 190 200 210 KIAA13 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE 860 870 880 890 900 910 220 230 240 250 260 270 KIAA13 CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK :::::::::::::::::: ::::::::::.:::::::::::::::::::::::::::::: gi|571 CRILGHSDRCWMPRNPMPTRSKSPEHVRNVIALSIEATAADVEAYDDCGPTKRTFATFGK 920 930 940 950 960 970 280 290 300 310 320 330 KIAA13 DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS :::.: :::::::::.:::::::::::::..:::::::::::::::::::::: :::::: gi|571 DVSEHLAEERPTLKGRRTVDVTICSPKVNGAIREAGNGCEAISPVTSPLHLKSPLPTKPS 980 990 1000 1010 1020 1030 340 350 360 370 380 390 KIAA13 VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV :::::::::::.:::::. ::::.:::::::::::::::::::.: :::::.:::::: gi|571 VSYTIALAPPAHDLEQYI---NNGPSRPSEAEPRGADSEKVMHEVNPTLKEGRDKESPGV 1040 1050 1060 1070 1080 1090 KIAA13 KRLKDIVL ::::::.: gi|571 KRLKDIIL 398 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Wed Mar 4 09:55:44 2009 done: Wed Mar 4 10:00:42 2009 Total Scan time: 1493.560 Total Display time: 0.170 Function used was FASTA [version 34.26.5 April 26, 2007]