# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh12154.fasta.huge -Q ../query/KIAA1313.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1313, 398 aa vs ./tmplib.24314 library 1987107 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.6864+/-0.00558; mu= 10.0259+/- 0.380 mean_var=111.1308+/-26.138, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.121663 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1562 ( 1136 res) fh20205 (1136) 238 52.6 1.3e-07 KIAA1400 ( 1093 res) hk08136 (1093) 190 44.2 4.5e-05 >>KIAA1562 ( 1136 res) fh20205 (1136 aa) initn: 302 init1: 130 opt: 238 Z-score: 228.3 bits: 52.6 E(): 1.3e-07 Smith-Waterman score: 337; 26.862% identity (55.053% similar) in 376 aa overlap (2-355:727-1072) 10 20 30 KIAA13 KRDNKEIRTYNCRIAEYSYGHQKKSSKKKKI :..:. :.::::.:: .: :. : ... : KIAA15 LDVSMIIIISLGAICAVLLVIMVLFATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQ-I 700 710 720 730 740 750 40 50 60 70 80 90 KIAA13 SKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTR :.:: ::: .. : . :: .:: .. : .: :.:... .... : KIAA15 HKGDITLVPT-INGTLPIRSHHRSSPSSS-PTLERGQ----MGSRQSHNSHQSLNSLVT- 760 770 780 790 800 100 110 120 130 140 KIAA13 NTSANHIYHH-----SFNSQGPQQPDLIINGVPLPETENY-SFDSNYVNSRAHLIKSSST :.::. .. . . . .: . ... . . . :: .: ::.. . KIAA15 -ISSNHVPENFSLELTHATPAVEQVSQLLSMLHQGQYQPRPSFRGNKY-SRSY----RYA 810 820 830 840 850 860 150 160 170 180 190 200 KIAA13 FKDLEGNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGF ..:.. ::::::. .:. ::..:. : :. .. .:. . ... . : .. KIAA15 LQDMDKFSLKDSGRGDSEAGDSDYDLGR----DSPIDRLLGEGFSDL--FLTDGRIPAAM 870 880 890 900 910 210 220 230 240 250 KIAA13 H-CREECRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIE-----------ATAADVE . : ::::.:::::.:::: :.: : : .. :.. . : . : KIAA15 RLCTEECRVLGHSDQCWMP--PLP--SPSSDYRSNMFIPGEEFPTQPQQQHPHQSLEDDA 920 930 940 950 960 970 260 270 280 290 300 KIAA13 AYDDCGPTKRTFATFGKDV-SDHPAEERPT---LKGKRTVDVTICSPKVNSVIREAGNGC : : :..:.::::: .:. . . : :. .: . :.... . : KIAA15 QPADSGEKKKSFSTFGKDSPNDEDTGDTSTSSLLSEMSSVFQRLLPPSLDTY-----SEC 980 990 1000 1010 1020 310 320 330 340 350 360 KIAA13 EAISPVTSPLHLKSSLPTKPSVSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSE .. .: . :. ::.: .:.: ..: : . . ..: :: KIAA15 SEVDRSNSLERRKGPLPAK-TVGYPQGVAAWAASTHFQNPTTNCGPPLGTHSSVQPSSKW 1030 1040 1050 1060 1070 1080 370 380 390 KIAA13 KVMHEVSPILKEGRNKESPGVKRLKDIVL KIAA15 LPAMEEIPENYEEDDFDNVLNHLNDGKHELMDASELVAEINKLLQDVRQS 1090 1100 1110 1120 1130 >>KIAA1400 ( 1093 res) hk08136 (1093 aa) initn: 310 init1: 128 opt: 190 Z-score: 183.0 bits: 44.2 E(): 4.5e-05 Smith-Waterman score: 316; 29.562% identity (58.029% similar) in 274 aa overlap (20-285:825-1073) 10 20 30 40 KIAA13 KRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETD-- :.: .. .:::.::.:: :: . .. KIAA14 KEKKLNIYTCLASDCCLCCCCCGGGGSTCCGRQARA-RKKKLSKSDIMLVQSSNVPSNPA 800 810 820 830 840 850 50 60 70 80 90 100 KIAA13 KMNVVSCSSLTSSLNYFDY-HQQTLPLGCRRSESTFLNVENQNTRNTSANHIYHHSF-NS .. . ... : . .: .: : ... ::. . .:.:...: .. .. KIAA14 QVPIEESGGFGSHHHNQNYCYQVCLTPESAKTDLMFLK-PCSPSRSTDTEHNPCGAIVTG 860 870 880 890 900 910 110 120 130 140 150 160 KIAA13 QGPQQPDLIINGVPLP-ETENYSFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHEESDQ ::::.: :: : ::.. . .:. .: . . .::.:.. . : ::::: .:.: KIAA14 YTDQQPDIISNGSILSNETKHQRAELSYLVDRPRRV-NSSAFQEADIVSSKDSGHGDSEQ 920 930 940 950 960 970 170 180 190 200 210 220 KIAA13 TDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWMPR ::.:: :.: . : : .. .. : :::. :::::::::: KIAA14 GDSDHD---------ATN-----RAQSAGMDLFSN-------CTEECKALGHSDRCWMP- 980 990 1000 230 240 250 260 270 280 KIAA13 NPMPIRSKSPEHVRNIIALSIEATAADVEAYD--DCGP-TKRTFATFGKDVSDHPAEERP . .: ... :. . . .. :.:... . : ..:.:.::::. . : . :: KIAA14 SFVPSDGRQAADYRSNLHVPGMDSVPDTEVFETPEAQPGAERSFSTFGKEKALHSTLERK 1010 1020 1030 1040 1050 1060 290 300 310 320 330 340 KIAA13 TLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPSVSYTIALAPPA : : KIAA14 ELDGLLTNTRAPYKPPYLTRKRIC 1070 1080 1090 398 residues in 1 query sequences 1987107 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:17:22 2008 done: Thu Dec 18 15:17:22 2008 Total Scan time: 0.390 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]