hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23193787/chunk_1/iprscan-20080501-23193787.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1312 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00209 414.9 4.4e-120 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00209 1/13 433 485 .. 1 66 [] 55.4 7.5e-12 SM00209 2/13 723 778 .. 1 66 [] 12.6 0.42 SM00209 3/13 780 828 .. 1 66 [] 0.4 10 SM00209 4/13 842 896 .. 1 66 [] 34.7 1.3e-05 SM00209 5/13 897 946 .. 1 66 [] 28.7 0.00081 SM00209 6/13 952 1008 .. 1 66 [] 33.9 2.2e-05 SM00209 7/13 1028 1082 .. 1 66 [] 36.5 3.5e-06 SM00209 8/13 1084 1138 .. 1 66 [] 36.4 3.9e-06 SM00209 9/13 1174 1226 .. 1 66 [] 31.8 9.6e-05 SM00209 10/13 1227 1282 .. 1 66 [] 41.6 1.1e-07 SM00209 11/13 1286 1341 .. 1 66 [] 35.4 7.7e-06 SM00209 12/13 1343 1397 .. 1 66 [] 28.7 0.00078 SM00209 13/13 1400 1455 .. 1 66 [] 38.9 7e-07 Alignments of top-scoring domains: SM00209: domain 1 of 13, from 433 to 485: score 55.4, E = 7.5e-12 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg w++Ws+ ++CS +tCGgG ++t R c+ p+p +ngg KIAA1312 433 WGSWSPFGTCS-RTCGGG-----IKTAIR-----ECNRPEP--KNGG 466 epCs....EtrpCntqpnLqpCp<-* ++C +++ ++ Cnt+ pC KIAA1312 467 KYCVgrrmKFKSCNTE----PCL 485 SM00209: domain 2 of 13, from 723 to 778: score 12.6, E = 0.42 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg w + ++W +CS ++C G r+R+ vc + + + + KIAA1312 723 WNSHGPWQACS-KPC-QG-----ERKRKL----VCTRESDQLT-VSD 757 epCs.......EtrpCntqpnLqpCp<-* ++C++ +++++ t+pC t +C+ KIAA1312 758 QRCDrlpqpghITEPCGT-----DCD 778 SM00209: domain 3 of 13, from 780 to 828: score 0.4, E = 10 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg + + S+CS ++CG G rt c + + +g KIAA1312 780 RWHVASRSECS-AQCGLG-----YRTLDI-----YCAKYS---RLDG 812 epCs.EtrpCntqpnLqpCp<-* + + C+ + p p KIAA1312 813 KTEKvDDGFCSSH----PKP 828 SM00209: domain 4 of 13, from 842 to 896: score 34.7, E = 1.3e-05 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg + s W++CS ++C gG +++R+ c++ + ++ KIAA1312 842 GWRYSAWTECS-KSCDGG-----TQRRRAI----CVNTRND--VLDD 876 epCs.....EtrpCntqpnLqpCp<-* + C+++++ + C++ pCp KIAA1312 877 SKCThqekvTIQRCSEF----PCP 896 SM00209: domain 5 of 13, from 897 to 946: score 28.7, E = 0.00081 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg + ++WS+C vtCG+G +++R+ +c + + ++ KIAA1312 897 QWKSGDWSECL-VTCGKG-----HKHRQV----WCQFGED---RLND 930 epCs.EtrpCntqpnLqpCp<-* + C++Et+p ++q C KIAA1312 931 RMCDpETKPTSMQ----TCQ 946 SM00209: domain 6 of 13, from 952 to 1008: score 33.9, E = 2.2e-05 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg ++ ++W++CS vtCG G + R + ++++ + +++ KIAA1312 952 SWQAGPWGQCS-VTCGQG-----YQLRAVKCIIGTYMS-----VVDD 987 epCs......EtrpCntqpnLqpCp<-* +C +++++t++C+++ C+ KIAA1312 988 NDCNaatrptDTQDCELP----SCH 1008 SM00209: domain 7 of 13, from 1028 to 1082: score 36.5, E = 3.5e-06 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg w +++W+pCS +tCG+G +r+R+ s c + +++ ++ KIAA1312 1028 WR-FGSWTPCS-ATCGKG-----TRMRYVS----CRDENGS--VADE 1061 epCs......EtrpCntqpnLqpCp<-* + C + +++ +++C++ pC KIAA1312 1062 SACAtlprpvAKEECSVT----PCG 1082 SM00209: domain 8 of 13, from 1084 to 1138: score 36.4, E = 3.9e-06 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg w + WS+CS vtCG G + tR+ +c++ + KIAA1312 1084 WKALD-WSSCS-VTCGQG-----RATRQV----MCVNYSDH--VIDR 1117 epCs......EtrpCntqpnLqpCp<-* ++C+++ ++ ++C+++ pCp KIAA1312 1118 SECDqdyipeTDQDCSMS----PCP 1138 SM00209: domain 9 of 13, from 1174 to 1226: score 31.8, E = 9.6e-05 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg w +++W++CS tC gG ++R+ vc + ++ KIAA1312 1174 WR-TGPWGACS-STCAGG-----SQRRVV----VCQDENGYTA---- 1205 epCs......EtrpCntqpnLqpCp<-* +C ++ +++E+r+C+ pCp KIAA1312 1206 NDCVerikpdEQRACESG----PCP 1226 SM00209: domain 10 of 13, from 1227 to 1282: score 41.6, E = 1.1e-07 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg ++ + W++C+ + CGgG +rtR vc + ++ ++++ KIAA1312 1227 QWAYGNWGECT-KLCGGG-----IRTRLV----VCQRSNGE--RFPD 1261 epCs......EtrpCntqpnLqpCp<-* +C+ +++++ ++Cnt+ +Cp KIAA1312 1262 LSCEildkppDREQCNTH----ACP 1282 SM00209: domain 11 of 13, from 1286 to 1341: score 35.4, E = 7.7e-06 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg +++++WS+CS v+CG+G +++R+ c++ +++ KIAA1312 1286 AWSTGPWSSCS-VSCGRG-----HKQRNV-----YCMAKDGSH-LES 1320 epCs......EtrpCntqpnLqpCp<-* +C + +++ r C + Cp KIAA1312 1321 DYCKhlakphGHRKCRGG----RCP 1341 SM00209: domain 12 of 13, from 1343 to 1397: score 28.7, E = 0.00078 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg w + WS+CS v+CG+G v++R+ +c + + + KIAA1312 1343 WKAGA-WSQCS-VSCGRG-----VQQRHV----GCQIGTHK--IARE 1376 epCs......EtrpCntqpnLqpCp<-* +C + ++++ r+C ++ Cp KIAA1312 1377 TECNpytrpeSERDCQGP----RCP 1397 SM00209: domain 13 of 13, from 1400 to 1455: score 38.9, E = 7e-07 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg + +eW +C+ +tCG+G r R+ vc++ +++ ++ g KIAA1312 1400 TWRAEEWQECT-KTCGEG-----SRYRKV----VCVDDNKN--EVHG 1434 epCs......EtrpCntqpnLqpCp<-* ++C+ ++++ + + C++q pC+ KIAA1312 1435 ARCDvskrpvDRESCSLQ----PCE 1455 //