hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23193787/chunk_1/iprscan-20080501-23193787.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1312 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00090.9.fs Thrombospondin type 1 domain 209.8 1.6e-62 12 PF00090.9.ls Thrombospondin type 1 domain 196.4 6.3e-56 11 PF05986.4.ls ADAM-TS Spacer 1 191.6 1.8e-54 1 PF05986.4.fs ADAM-TS Spacer 1 189.6 6.8e-54 1 PF01421.9.fs Reprolysin (M12B) family zinc metallo 78.8 4.4e-21 2 PF01421.9.ls Reprolysin (M12B) family zinc metallo 69.4 7.7e-19 1 PF01562.9.fs Reprolysin family propeptide 22.8 9.4e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01562.9.fs 1/1 5 49 .. 123 165 .] 22.8 9.4e-06 PF01421.9.ls 1/1 135 341 .. 1 203 [] 69.4 7.7e-19 PF01421.9.fs 2/2 201 341 .. 66 203 .] 62.7 1.1e-16 PF00090.9.fs 1/12 434 484 .. 1 55 [] 31.6 7.6e-09 PF00090.9.ls 1/11 434 484 .. 1 55 [] 33.5 7.1e-07 PF05986.4.fs 1/1 595 713 .. 1 128 [] 189.6 6.8e-54 PF05986.4.ls 1/1 595 713 .. 1 128 [] 191.6 1.8e-54 PF00090.9.ls 2/11 841 895 .. 1 55 [] 5.9 0.011 PF00090.9.ls 3/11 898 950 .. 1 55 [] 10.5 0.0032 PF00090.9.ls 4/11 953 1007 .. 1 55 [] 18.7 0.00033 PF00090.9.fs 5/12 953 976 .. 1 24 [. 20.6 1.5e-05 PF00090.9.ls 5/11 1026 1081 .. 1 55 [] 21.4 0.00016 PF00090.9.fs 6/12 1026 1051 .. 1 24 [. 24.6 9.7e-07 PF00090.9.ls 6/11 1082 1137 .. 1 55 [] 24.3 7e-05 PF00090.9.fs 7/12 1089 1137 .. 6 55 .] 22.7 3.6e-06 PF00090.9.fs 8/12 1174 1225 .. 1 55 [] 21.6 7.7e-06 PF00090.9.ls 7/11 1174 1225 .. 1 55 [] 23.5 8.8e-05 PF00090.9.ls 8/11 1228 1281 .. 1 55 [] 14.0 0.0012 PF00090.9.fs 10/12 1287 1322 .. 1 41 [. 26.3 2.9e-07 PF00090.9.ls 9/11 1287 1340 .. 1 55 [] 24.2 7.4e-05 PF00090.9.ls 10/11 1343 1396 .. 1 55 [] 2.8 0.027 PF00090.9.fs 11/12 1346 1367 .. 4 25 .. 18.4 7e-05 PF00090.9.ls 11/11 1404 1454 .. 1 55 [] 17.7 0.00044 PF00090.9.fs 12/12 1404 1454 .. 4 55 .] 17.9 9.8e-05 Alignments of top-scoring domains: PF01562.9.fs: domain 1 of 1, from 5 to 49: score 22.8, E = 9.4e-06 *->aVslSTCsGGLRGllqlenvsYgIEPlesssgfeA..Q.rlPHiiY< ++ +S Cs G G ++ ++ Y+IEPl+s ++ e ++ + PHiiY KIAA1312 5 TAVISLCS-GMLGTFRSHDGDYFIEPLQSMDEQEDeeEqNKPHIIY 49 -* KIAA1312 - - PF01421.9.ls: domain 1 of 1, from 135 to 341: score 69.4, E = 7.7e-19 *->rYiELvIVvDhgmytkygsdlnkirqrVhqivNlvNeiYrpq..... r++E+ +V+D++m+ ++g +l + +++ ++ +v +iY++ + ++ KIAA1312 135 RFVEVLVVADNRMVSYHGENLQH---YILTLMSIVASIYKDPsignl 178 LNIrVvLvgLEIWsdgDkInvqsdandTLhsFgeWRetdLlkr...ksHD +NI +v + + I +++D +++ +a++TL++F +W+++ ++ ++++ HD KIAA1312 179 INIVIV-NLIVIHNEQDGPSISFNAQTTLKNFCQWQHS--KNSpggIHHD 225 nAqLLtgidf.....dgntiGaAyvggmCspkrSvGVvqdhspivllvAv A LLt d + +++ t+G+A +g++C+p rS+ + +d l+ A KIAA1312 226 TAVLLTRQDIcrahdKCDTLGLAELGTICDPYRSCSISEDS---GLSTAF 272 tMAHELGHNLGmtHDdkntdgCtCe..gggsCIMnpvassspskKkFSnC t+AHELGH + m+HDd+n +C+ e+ ++ +M+p + + ++ S+C KIAA1312 273 TIAHELGHVFNMPHDDNN--KCKEEgvKSPQHVMAPTLNFYTNPWMWSKC 320 SkddyqkFltkqkpqCLlNkP<-* S+++ Fl + + CLlN+P KIAA1312 321 SRKYITEFLDTGYGECLLNEP 341 PF01421.9.fs: domain 2 of 2, from 201 to 341: score 62.7, E = 1.1e-16 *->dandTLhsFgeWRetdLlkr...ksHDnAqLLtgidf.....dgnti +a++TL++F +W+++ ++ ++++ HD A LLt d + +++ t+ KIAA1312 201 NAQTTLKNFCQWQHS--KNSpggIHHDTAVLLTRQDIcrahdKCDTL 245 GaAyvggmCspkrSvGVvqdhspivllvAvtMAHELGHNLGmtHDdkntd G+A +g++C+p rS+ + +d l+ A t+AHELGH + m+HDd+n KIAA1312 246 GLAELGTICDPYRSCSISEDS---GLSTAFTIAHELGHVFNMPHDDNN-- 290 gCtCe..gggsCIMnpvassspskKkFSnCSkddyqkFltkqkpqCLlNk +C+ e+ ++ +M+p + + ++ S+CS+++ Fl + + CLlN+ KIAA1312 291 KCKEEgvKSPQHVMAPTLNFYTNPWMWSKCSRKYITEFLDTGYGECLLNE 340 P<-* P KIAA1312 341 P 341 PF00090.9.fs: domain 1 of 12, from 434 to 484: score 31.6, E = 7.6e-09 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete + Ws+ CS TCG+Gi+t +R cn p+P+ gg+ C+g ++ KIAA1312 434 GSWSPFGTCSRTCGGGIKTAIRECNRPEPK-NGGKYCVGRRMK--FK 477 aCdmmdkC<-* C + ++C KIAA1312 478 SC-NTEPC 484 PF00090.9.ls: domain 1 of 11, from 434 to 484: score 33.5, E = 7.1e-07 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete + Ws+ CS TCG+Gi+t +R cn p+P+ gg+ C+g ++ KIAA1312 434 GSWSPFGTCSRTCGGGIKTAIRECNRPEPK-NGGKYCVGRRMK--FK 477 aCdmmdkC<-* C + ++C KIAA1312 478 SC-NTEPC 484 PF05986.4.fs: domain 1 of 1, from 595 to 713: score 189.6, E = 6.8e-54 *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA ktv GtF++ + +GYn Vv+IPaGA++I++r+++ Sg+++ddnyLA KIAA1312 595 KTVAGTFNTVH--YGYNTVVRIPAGATNIDVRQHSFSGETDDDNYLA 639 LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt L +s G+ ++LNGn+++ +++r++ ++ +v+eYs+ s + a E+++ KIAA1312 640 LSSSK-GE-FLLNGNFVVTMAKREIRIGNAVVEYSG-SET----AVERIN 682 atGPtnepLivqvLfqggapnpgikYeYtiP<-* +t ++++L +qvL++g+ np+++Y+++iP KIAA1312 683 STDRIEQELLLQVLSVGKLYNPDVRYSFNIP 713 PF05986.4.ls: domain 1 of 1, from 595 to 713: score 191.6, E = 1.8e-54 *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA ktv GtF++ + +GYn Vv+IPaGA++I++r+++ Sg+++ddnyLA KIAA1312 595 KTVAGTFNTVH--YGYNTVVRIPAGATNIDVRQHSFSGETDDDNYLA 639 LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt L +s G+ ++LNGn+++ +++r++ ++ +v+eYs+ s + a E+++ KIAA1312 640 LSSSK-GE-FLLNGNFVVTMAKREIRIGNAVVEYSG-SET----AVERIN 682 atGPtnepLivqvLfqggapnpgikYeYtiP<-* +t ++++L +qvL++g+ np+++Y+++iP KIAA1312 683 STDRIEQELLLQVLSVGKLYNPDVRYSFNIP 713 PF00090.9.ls: domain 2 of 11, from 841 to 895: score 5.9, E = 0.011 *->spW..seWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.. + W+ s W++CS++C +G++ R+ c+++ + ++d+ + KIAA1312 841 GGWrySAWTECSKSCDGGTQRRRAICVNT-------RNDVLDDSKct 880 ....leteaCdmmdkC<-* +++++ ++ C + +C KIAA1312 881 hqekVTIQRC-SEFPC 895 PF00090.9.ls: domain 3 of 11, from 898 to 950: score 10.5, E = 0.0032 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.... + WS+C VTCGkG++ Rq c+ + ++++ +++ KIAA1312 898 WKSGDWSECLVTCGKGHKHRQVWCQ--------FGEDRLNDRMcdpe 936 ...leteaCdmmdkC<-* +++ + C +++C KIAA1312 937 tkpTSMQTC-QQPEC 950 PF00090.9.ls: domain 4 of 11, from 953 to 1007: score 18.7, E = 0.00033 *->spWseWSpCSVTCGkGirtRqRvc....nspaPqkkggepCtgdvqe + ++W +CSVTCG G + R +c ++ + + + ++C +++ KIAA1312 953 WQAGPWGQCSVTCGQGYQLRAVKCiigtYMSV---VDDNDCNAATRP 996 leteaCdmmdkC<-* +t+ C + + C KIAA1312 997 TDTQDC-ELPSC 1007 PF00090.9.fs: domain 5 of 12, from 953 to 976: score 20.6, E = 1.5e-05 *->spWseWSpCSVTCGkGirtRqRvc<-* + ++W +CSVTCG G + R +c KIAA1312 953 WQAGPWGQCSVTCGQGYQLRAVKC 976 PF00090.9.ls: domain 5 of 11, from 1026 to 1081: score 21.4, E = 0.00016 *->spW..seWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.. ++W+ + W+pCS TCGkG+r+R+ +c + g+ + + KIAA1312 1026 TQWrfGSWTPCSATCGKGTRMRYVSCRDE----NGSVADESACATlp 1068 ..leteaCdmmdkC<-* +++ e C ++ +C KIAA1312 1069 rpVAKEEC-SVTPC 1081 PF00090.9.fs: domain 6 of 12, from 1026 to 1051: score 24.6, E = 9.7e-07 *->spW..seWSpCSVTCGkGirtRqRvc<-* ++W+ + W+pCS TCGkG+r+R+ +c KIAA1312 1026 TQWrfGSWTPCSATCGKGTRMRYVSC 1051 PF00090.9.ls: domain 6 of 11, from 1082 to 1137: score 24.3, E = 7e-05 *->spWse..WSpCSVTCGkGirtRqRvcnspaPqk.kggepCtgdvqel ++W +WS+CSVTCG G tRq +c++ + + + C d+++ KIAA1312 1082 GQWKAldWSSCSVTCGQGRATRQVMCVNYSD-HvIDRSECDQDYIP- 1126 etea.CdmmdkC<-* et +C +m +C KIAA1312 1127 ETDQdC-SMSPC 1137 PF00090.9.fs: domain 7 of 12, from 1089 to 1137: score 22.7, E = 3.6e-06 *->WSpCSVTCGkGirtRqRvcnspaPqk.kggepCtgdvqeletea.Cd WS+CSVTCG G tRq +c++ + + + C d+++ et +C KIAA1312 1089 WSSCSVTCGQGRATRQVMCVNYSD-HvIDRSECDQDYIP-ETDQdC- 1132 mmdkC<-* +m +C KIAA1312 1133 SMSPC 1137 PF00090.9.fs: domain 8 of 12, from 1174 to 1225: score 21.6, E = 7.7e-06 *->spWseWSpCSVTCGkGirtRqRvcnspaPqk.kggepCtgdvqelet +++W +CS TC +G++ R+ vc+ + ++ ++C++ + e KIAA1312 1174 WRTGPWGACSSTCAGGSQRRVVVCQDE---NgYTANDCVERIKPDEQ 1217 eaCdmmdkC<-* +aC + +C KIAA1312 1218 RAC-ESGPC 1225 PF00090.9.ls: domain 7 of 11, from 1174 to 1225: score 23.5, E = 8.8e-05 *->spWseWSpCSVTCGkGirtRqRvcnspaPqk.kggepCtgdvqelet +++W +CS TC +G++ R+ vc+ + ++ ++C++ + e KIAA1312 1174 WRTGPWGACSSTCAGGSQRRVVVCQDE---NgYTANDCVERIKPDEQ 1217 eaCdmmdkC<-* +aC + +C KIAA1312 1218 RAC-ESGPC 1225 PF00090.9.ls: domain 8 of 11, from 1228 to 1281: score 14.0, E = 0.0012 *->spWseWSpCSVTCGkGirtRqRvcnspaPqk.kggepCtgdvqe..l + W +C++ CG+GirtR vc+ ++ +++ + +++ KIAA1312 1228 WAYGNWGECTKLCGGGIRTRLVVCQRS---NgERFPDLSCEILDkpP 1271 eteaCdmmdkC<-* + e C + + C KIAA1312 1272 DREQC-NTHAC 1281 PF00090.9.fs: domain 10 of 12, from 1287 to 1322: score 26.3, E = 2.9e-07 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdv<-* +++WS+CSV+CG G+++R +c ++ +g++++ d+ KIAA1312 1287 WSTGPWSSCSVSCGRGHKQRNVYCMAK-----DGSHLESDY 1322 PF00090.9.ls: domain 9 of 11, from 1287 to 1340: score 24.2, E = 7.4e-05 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.... +++WS+CSV+CG G+++R +c ++ +g++++ d+ + + KIAA1312 1287 WSTGPWSSCSVSCGRGHKQRNVYCMAK-----DGSHLESDYCKhlak 1328 .leteaCdmmdkC<-* + ++C + C KIAA1312 1329 pHGHRKC-RGGRC 1340 PF00090.9.ls: domain 10 of 11, from 1343 to 1396: score 2.8, E = 0.027 *->spWseWSpCSVTCGkGirtRqRvcn...spaPqkkggepCtgdvqel + WS+CSV+CG G+++R+ c+ +++++ + C +++ KIAA1312 1343 WKAGAWSQCSVSCGRGVQQRHVGCQigtHKI---ARETECNPYTRP- 1385 etea.CdmmdkC<-* e+e +C + C KIAA1312 1386 ESERdC-QGPRC 1396 PF00090.9.fs: domain 11 of 12, from 1346 to 1367: score 18.4, E = 7e-05 *->seWSpCSVTCGkGirtRqRvcn<-* + WS+CSV+CG G+++R+ c+ KIAA1312 1346 GAWSQCSVSCGRGVQQRHVGCQ 1367 PF00090.9.ls: domain 11 of 11, from 1404 to 1454: score 17.7, E = 0.00044 *->spWseWSpCSVTCGkGirtRqRvcnspaPqk..kggepCtgdvqele +eW +C++TCG+G+r R+ vc+ k++ g+ C +++++ KIAA1312 1404 ---EEWQECTKTCGEGSRYRKVVCVDDN--KneVHGARCDVSKRPVD 1445 teaCdmmdkC<-* e C + ++C KIAA1312 1446 RESC-SLQPC 1454 PF00090.9.fs: domain 12 of 12, from 1404 to 1454: score 17.9, E = 9.8e-05 *->seWSpCSVTCGkGirtRqRvcnspaPqk..kggepCtgdvqeletea +eW +C++TCG+G+r R+ vc+ k++ g+ C +++++ e KIAA1312 1404 EEWQECTKTCGEGSRYRKVVCVDDN--KneVHGARCDVSKRPVDRES 1448 CdmmdkC<-* C + ++C KIAA1312 1449 C-SLQPC 1454 //