hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23125122/chunk_1/iprscan-20080501-23125122.nocrc
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Query sequence: KIAA1308
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00617.10.ls RasGEF domain                                  356.5   3.9e-104   1
PF00617.10.fs RasGEF domain                                  354.7   1.4e-103   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00617.10.fs   1/1     179   393 ..     1   227 []   354.7 1.4e-103
PF00617.10.ls   1/1     179   393 ..     1   227 []   356.5 3.9e-104

Alignments of top-scoring domains:
PF00617.10.fs: domain 1 of 1, from 179 to 393: score 354.7, E = 1.4e-103
                   *->LlldplelAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkksfk
                      L ++p+++A+Q+TL+++elfkk++p+++Lg        ++W+++++k
    KIAA1308   179    LVFPPDLVAEQFTLMDAELFKKVVPYHCLG--------SIWSQRDKK 217  

                   vkneripnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkRaev
                   +k++++p+i++t+++fN ++n+v++t+l++          + ++++Ra+v
    KIAA1308   218 GKEHLAPTIRATVTQFNSVANCVITTCLGNR---------STKAPDRARV 258  

                   iqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqslklI
                   ++++I+VA++cR L+NF+Sl+aI+sAL+s++I+RLkkTWe v+++s++  
    KIAA1308   259 VEHWIEVARECRILKNFSSLYAILSALQSNSIHRLKKTWEDVSRDSFRI- 307  

                   feeLnkLmdsdrNfsnyRelLksigplappnLd...........ddfvra
                   f++L++++++++N+s +RelL+++g++++++L+ ++++ +++++++++++
    KIAA1308   308 FQKLSEIFSDENNYSLSRELLIKEGTSKFATLEmnpkraqkrpkETGIIQ 357  

                   PCVPFfGvYLsDLtfleeGnpdyleekKINtnlvNFsKrrk<-*
                   ++VP++G++L+DL++l+++++dyl+     ++l+NF+Krrk   
    KIAA1308   358 GTVPYLGTFLTDLVMLDTAMKDYLY-----GRLINFEKRRK    393  

PF00617.10.ls: domain 1 of 1, from 179 to 393: score 356.5, E = 3.9e-104
                   *->LlldplelAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkksfk
                      L ++p+++A+Q+TL+++elfkk++p+++Lg        ++W+++++k
    KIAA1308   179    LVFPPDLVAEQFTLMDAELFKKVVPYHCLG--------SIWSQRDKK 217  

                   vkneripnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkRaev
                   +k++++p+i++t+++fN ++n+v++t+l++          + ++++Ra+v
    KIAA1308   218 GKEHLAPTIRATVTQFNSVANCVITTCLGNR---------STKAPDRARV 258  

                   iqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqslklI
                   ++++I+VA++cR L+NF+Sl+aI+sAL+s++I+RLkkTWe v+++s++  
    KIAA1308   259 VEHWIEVARECRILKNFSSLYAILSALQSNSIHRLKKTWEDVSRDSFRI- 307  

                   feeLnkLmdsdrNfsnyRelLksigplappnLd...........ddfvra
                   f++L++++++++N+s +RelL+++g++++++L+ ++++ +++++++++++
    KIAA1308   308 FQKLSEIFSDENNYSLSRELLIKEGTSKFATLEmnpkraqkrpkETGIIQ 357  

                   PCVPFfGvYLsDLtfleeGnpdyleekKINtnlvNFsKrrk<-*
                   ++VP++G++L+DL++l+++++dyl+     ++l+NF+Krrk   
    KIAA1308   358 GTVPYLGTFLTDLVMLDTAMKDYLY-----GRLINFEKRRK    393  

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