hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23060998/chunk_1/iprscan-20080501-23060998.nocrc
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Query sequence: KIAA1304
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00324                                                 229.9    2.2e-64   1
SM00055                                                  66.2    4.1e-15   1
SM00326                                                  63.5    2.7e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00055    1/1      11   110 ..     1   103 []    66.2  4.1e-15
SM00324    1/1     483   657 ..     1   193 []   229.9  2.2e-64
SM00326    1/1     712   767 ..     1    58 []    63.5  2.7e-14

Alignments of top-scoring domains:
SM00055: domain 1 of 1, from 11 to 110: score 66.2, E = 4.1e-15
                   *->mgfwselwsddGfeaLlsrlknglrlledlkkflreRakiEeeYAkk
                      ++++ +l  +++ ++L+++++  ++ll+dl+ f+r++a+iE eY+++
    KIAA1304    11    LEIRAQL--VEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIETEYSRN 55   

                   Lqklskkyfnkkssvgdlravreteselgslkkswevllsetdalakshl
                   L kl++++  k  s  d+++ ++++  l+++ ++w  ll ++++++k h 
    KIAA1304    56 LEKLAERFMAKTRSTKDHQQYKKDQNLLSPV-NCWYLLLNQVRRESKDHA 104  

                   qlsedL<-*
                   +ls+ +   
    KIAA1304   105 TLSDIY    110  

SM00324: domain 1 of 1, from 483 to 657: score 229.9, E = 2.2e-64
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      + iP+ive+Ci+++  +Gl+ +GI+RvsGs+ +v+ ++++f++ge +
    KIAA1304   483    QVIPLIVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNSFERGENp 529  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                               + d +++d+++vAg+LKly+R L +PL+++e + ++i+
    KIAA1304   530 L-----------ADDQSNHDINSVAGVLKLYFRGLENPLFPKERFNDLIS 568  

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                   ++++              ++ +er  ++r+ll +LP++ + ++ryL+ +L
    KIAA1304   569 CIRI--------------DNLYERALHIRKLLLTLPRSVLIVMRYLFaFL 604  

                   nrVaehsevNkMtarNLAivFgPtLlrpp.....ltdikhqnkvvetlie
                   n+++++s++N+M++ NLAi+FgPtL+  p+ ++++++ +h+n++++t+i 
    KIAA1304   605 NHLSQYSDENMMDPYNLAICFGPTLMPVPeiqdqVSCQAHVNEIIKTIII 654  

                   nad<-*
                   +++   
    KIAA1304   655 HHE    657  

SM00326: domain 1 of 1, from 712 to 767: score 63.5, E = 2.7e-14
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                       +++A++Dy ++++ ELsFkkG  +++  + +++WweG++n  G  G
    KIAA1304   712    IEAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHN--GIDG 756  

                   lfPsnYVeeie<-*
                   l+P+ Y+ +++   
    KIAA1304   757 LVPHQYIVVQD    767  

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