hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23042663/chunk_1/iprscan-20080501-23042663.nocrc
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Query sequence: KIAA1303
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  91.3    1.2e-22   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/7     796   834 ..     1    46 []     6.6       44
SM00320    2/7     836   881 ..     1    46 []    11.5      7.4
SM00320    3/7     889   935 ..     1    46 []     1.2  3.2e+02
SM00320    4/7     938   978 ..     1    46 []    21.7      0.1
SM00320    5/7     984  1024 ..     1    46 []    20.5     0.24
SM00320    6/7    1030  1065 ..     1    46 []    10.2       12
SM00320    7/7    1067  1113 ..     1    46 []    19.5      0.4

Alignments of top-scoring domains:
SM00320: domain 1 of 7, from 796 to 834: score 6.6, E = 44
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                             l+   g    + v+f+p         ++a++++D+ i++W
    KIAA1303   796    RlDDQIFLNRNPG--VPSVVKFHPFT------PCIAVADkDS-ICFW 833  

                   d<-*
                   d   
    KIAA1303   834 D    834  

SM00320: domain 2 of 7, from 836 to 881: score 11.5, E = 7.4
                   *->t.kllrtlkgHtge...spVtsvafspdggssdspnllasgs.Dgti
                      ++     +  H+g+++ ++Vt++ +    ++    +ll+++ +Dg i
    KIAA1303   836    EkGEKLDYF-HNGNpryTRVTAMEYLNGQDC----SLLLTATdDGAI 877  

                   rlWd<-*
                   r+W+   
    KIAA1303   878 RVWK    881  

SM00320: domain 3 of 7, from 889 to 935: score 1.2, E = 3.2e+02
                   *->t.kllrtlkgHtge.....spVtsvafspdggssdspnllasgs.Dg
                      +++ +  ++g +++ ++++++   v++ +         ll s+++ +
    KIAA1303   889    NpEMVTAWQGLSDMlpttrGAGMVVDWEQET------GLLMSSGdVR 929  

                   tirlWd<-*
                    +r+Wd   
    KIAA1303   930 IVRIWD    935  

SM00320: domain 4 of 7, from 938 to 978: score 21.7, E = 0.1
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                          ++ +++g ++   Vts++ +++       +l+++g +Dg+ir+
    KIAA1303   938    ReMKVQDIPtGADS--CVTSLSCDSHR------SLIVAGLgDGSIRV 976  

                   Wd<-*
                   +d   
    KIAA1303   977 YD    978  

SM00320: domain 5 of 7, from 984 to 1024: score 20.5, E = 0.24
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +   ++t++ Ht+  +V   +          + +++s s +g +r++
    KIAA1303   984    SeCRVMTYREHTA--WVVKASLQKRP-----DGHIVSVSvNGDVRIF 1023 

                   d<-*
                   d   
    KIAA1303  1024 D    1024 

SM00320: domain 6 of 7, from 1030 to 1065: score 10.2, E = 12
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + ++l++ k      + t+++++p        +l+a+gs +    ++
    KIAA1303  1030    SvNVLQIVK------GLTALDIHPQA------DLIACGSvNQFTAIY 1064 

                   d<-*
                   +   
    KIAA1303  1065 N    1065 

SM00320: domain 7 of 7, from 1067 to 1113: score 19.5, E = 0.4
                   *->t.kllrtlkgHtge.....spVtsvafspdggssdspnllasgs.Dg
                      +++l+  +k  +g  +++ ++++++af+p+        +la+gs+D 
    KIAA1303  1067    SgELINNIKYYDGFmgqrvGAISCLAFHPHW------PHLAVGSnDY 1107 

                   tirlWd<-*
                    i +++   
    KIAA1303  1108 YISVYS    1113 

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