hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23042663/chunk_1/iprscan-20080501-23042663.nocrc
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Query sequence: KIAA1303
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.fs WD domain, G-beta repeat                        71.2    4.3e-19   7
PF00400.22.ls WD domain, G-beta repeat                        71.2      3e-18   7
PF02985.12.ls HEAT repeat                                     69.7    8.7e-18   4
PF02985.12.fs HEAT repeat                                     62.2      2e-16   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02985.12.ls   1/4     335   372 ..     1    36 []    25.3   0.0002
PF02985.12.ls   2/4     382   414 ..     1    36 []    23.7  0.00062
PF02985.12.ls   4/4     589   625 ..     1    36 []    13.6     0.67
PF00400.22.fs   2/7     863   881 ..    19    38 .]    11.6    0.027
PF00400.22.fs   4/7     940   978 ..     1    38 []    18.9  0.00023
PF00400.22.fs   5/7     985  1024 ..     1    38 []    12.5    0.015
PF00400.22.fs   7/7    1086  1113 ..    10    38 .]    18.8  0.00026

Alignments of top-scoring domains:
PF02985.12.ls: domain 1 of 4, from 335 to 372: score 25.3, E = 0.0002
                   *->e.ild.ellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      e +l+++l+ ++l+ lnDp+p  R+ +a +Lg++ +++   
    KIAA1303   335    EaCLQgNLIAICLEQLNDPHPLLRQWVAICLGRIWQNF    372  

PF02985.12.ls: domain 2 of 4, from 382 to 414: score 23.7, E = 0.00062
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      ++++    + l +ll+Dp peVR+aA++aLg+++ +    
    KIAA1303   382    DsAH----EKLYSLLSDPIPEVRCAAVFALGTFVGNS    414  

PF02985.12.ls: domain 4 of 4, from 589 to 625: score 13.6, E = 0.67
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      +++ +++  +ll+l  Dp peV + A + L ++a ++   
    KIAA1303   589    NsVYTQIWRVLLHLAADPYPEVSDVAMKVLNSIAYKA    625  

PF00400.22.fs: domain 2 of 7, from 863 to 881: score 11.6, E = 0.027
                   *->pdsgpllasgSrDgtikiWd<-*
                      +d ++ll+++ +Dg i++W+   
    KIAA1303   863    QD-CSLLLTATDDGAIRVWK    881  

PF00400.22.fs: domain 4 of 7, from 940 to 978: score 18.9, E = 0.00023
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +++++ +g  s Vt+++++ + ++l++ g  Dg+i+++d   
    KIAA1303   940    MKVQdIPtGADSCVTSLSCDSH-RSLIVAGLGDGSIRVYD    978  

PF00400.22.fs: domain 5 of 7, from 985 to 1024: score 12.5, E = 0.015
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       + + +++ Ht++V   +       +++s S +g ++i+d   
    KIAA1303   985    ECRVmTYrEHTAWVVKASLQKRPDGHIVSVSVNGDVRIFD    1024 

PF00400.22.fs: domain 7 of 7, from 1086 to 1113: score 18.8, E = 0.00026
                   *->stVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++++c+af+p+  p+la gS D  i +++   
    KIAA1303  1086    GAISCLAFHPH-WPHLAVGSNDYYISVYS    1113 

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