hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23023636/chunk_1/iprscan-20080501-23023636.nocrc
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Query sequence: KIAA1302
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
TIGR01643    YD_repeat_2x: YD repeat (two copies)        85.1    6.9e-23   7

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
TIGR01643      2/7     859   900 ..     1    42 []     9.9      0.9
TIGR01643      3/7     923   964 ..     1    42 []    28.6  7.3e-06
TIGR01643      4/7    1134  1174 ..     1    42 []    19.2   0.0049
TIGR01643      5/7    1443  1482 ..     1    42 []    10.9     0.56
TIGR01643      6/7    1518  1560 ..     1    42 []    11.9     0.36

Alignments of top-scoring domains:
TIGR01643: domain 2 of 7, from 859 to 900: score 9.9, E = 0.9
                   *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-*
                      y ++g+++ +td +g+ + +  d+ g  +    pdg++  ++   
    KIAA1302   859    YTGDGDITLITDNNGNMVNVRRDSTGMPLWLVVPDGQVYWVT    900  

TIGR01643: domain 3 of 7, from 923 to 964: score 28.6, E = 7.3e-06
                   *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-*
                      +++ g l++  +++g+tt y+yd++grl+ +t p g+++s+    
    KIAA1302   923    HGNSGLLATKSNENGWTTFYEYDSFGRLTNVTFPTGQVSSFR    964  

TIGR01643: domain 4 of 7, from 1134 to 1174: score 19.2, E = 0.0049
                   *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-*
                      y++ g ++g+        r++yd+agr++++  +dg+++s++   
    KIAA1302  1134    YSPGGYIAGIQRGIM-SERMEYDQAGRITSRIFADGKTWSYT    1174 

TIGR01643: domain 5 of 7, from 1443 to 1482: score 10.9, E = 0.56
                   *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-*
                      yda+g+l ++   d   +ry+yd  g+l  + +  g+s +l+   
    KIAA1302  1443    YDADGQLQTVSINDKPLWRYSYDLNGNL--HLLSPGNSARLT    1482 

TIGR01643: domain 6 of 7, from 1518 to 1560: score 11.9, E = 0.36
                   *->ydaagrllgstdpdg.tttrytydaagrlveetdpdggstsle<-*
                      y+ ag l+   ++ g++ +ry yd++gr+v+  +  ++  ++    
    KIAA1302  1518    YNSAGLLIKAYNRAGsWSVRYRYDGLGRRVSSKSSHSHHLQFF    1560 

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