hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23004825/chunk_1/iprscan-20080501-23004825.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1301 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00632.15.ls HECT-domain (ubiquitin-transferase) 590.7 1.3e-174 1 PF00632.15.fs HECT-domain (ubiquitin-transferase) 588.8 4.8e-174 1 PF00397.16.ls WW domain 101.6 2.2e-27 2 PF00397.16.fs WW domain 97.6 2.3e-26 2 PF00168.20.fs C2 domain 42.0 5.9e-12 1 PF00168.20.ls C2 domain 44.0 4.8e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00168.20.fs 1/1 196 291 .. 1 88 [] 42.0 5.9e-12 PF00168.20.ls 1/1 196 291 .. 1 88 [] 44.0 4.8e-10 PF00397.16.ls 1/2 818 847 .. 1 30 [] 57.9 3.1e-14 PF00397.16.fs 1/2 818 847 .. 1 30 [] 55.9 1.1e-14 PF00397.16.fs 2/2 996 1025 .. 1 30 [] 41.7 1e-10 PF00397.16.ls 2/2 996 1025 .. 1 30 [] 43.7 5.7e-10 PF00632.15.fs 1/1 1276 1581 .] 1 351 [] 588.8 4.8e-174 PF00632.15.ls 1/1 1276 1581 .] 1 351 [] 590.7 1.3e-174 Alignments of top-scoring domains: PF00168.20.fs: domain 1 of 1, from 196 to 291: score 42.0, E = 5.9e-12 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqk.......... ++ ++A +L++ ++ +DPY k+++ + kk + ++ +++++ KIAA1301 196 FTLSDLRAVGLKK-G-MFFNPDPYLKMSIQPGKK-SSfptcahhgqe 239 kkTkvikktlNPvWN.EtFtFevpppdlqetLeieVyDydrfgr...ddf +++ +i +t NP+W++E++ F ++ Leie++D+ ++r+ f KIAA1301 240 RRSTIISNTTNPIWHrEKYSFF--ALLTDV-LEIEIKDKFAKSRpiiKRF 286 lGevs<-* lG+ + KIAA1301 287 LGKLT 291 PF00168.20.ls: domain 1 of 1, from 196 to 291: score 44.0, E = 4.8e-10 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqk.......... ++ ++A +L++ ++ +DPY k+++ + kk + ++ +++++ KIAA1301 196 FTLSDLRAVGLKK-G-MFFNPDPYLKMSIQPGKK-SSfptcahhgqe 239 kkTkvikktlNPvWN.EtFtFevpppdlqetLeieVyDydrfgr...ddf +++ +i +t NP+W++E++ F ++ Leie++D+ ++r+ f KIAA1301 240 RRSTIISNTTNPIWHrEKYSFF--ALLTDV-LEIEIKDKFAKSRpiiKRF 286 lGevs<-* lG+ + KIAA1301 287 LGKLT 291 PF00397.16.ls: domain 1 of 2, from 818 to 847: score 57.9, E = 3.1e-14 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lpp+We+r+d++Gr++Y++h+++tT+W++P KIAA1301 818 LPPNWEARIDSHGRIFYVDHVNRTTTWQRP 847 PF00397.16.fs: domain 1 of 2, from 818 to 847: score 55.9, E = 1.1e-14 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lpp+We+r+d++Gr++Y++h+++tT+W++P KIAA1301 818 LPPNWEARIDSHGRIFYVDHVNRTTTWQRP 847 PF00397.16.fs: domain 2 of 2, from 996 to 1025: score 41.7, E = 1e-10 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp gWe+ d +G+ ++++hn++tT++++P KIAA1301 996 LPRGWEMKHDHQGKAFFVDHNSRTTTFIDP 1025 PF00397.16.ls: domain 2 of 2, from 996 to 1025: score 43.7, E = 5.7e-10 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp gWe+ d +G+ ++++hn++tT++++P KIAA1301 996 LPRGWEMKHDHQGKAFFVDHNSRTTTFIDP 1025 PF00632.15.fs: domain 1 of 1, from 1276 to 1581: score 588.8, E = 4.8e-174 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +L+srelfnP+ygLFeys a+d+yt+qi+P s ++ KIAA1301 1276 FLVSRELFNPYYGLFEYS----------ANDTYTVQISPMSAF-VDN 1311 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD h+++F+F GrilGlAl ++ lld++F+r+FYK LL + ++l+Dle +D KIAA1301 1312 HHEWFRFSGRILGLALIHQYLLDAFFTRPFYKALL--RILCDLSDLEYLD 1359 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas e+++SL+w+++nd+ ++L+LtF+v+ee+ f KIAA1301 1360 EEFHQSLQWMKDNDIH------------DILDLTFTVNEEV---F----- 1389 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G+++++e LkP+G+nIpVT++NkkeY+e++v +r+++g+ +Q+e + + KIAA1301 1390 --GQITERE-LKPGGANIPVTEKNKKEYIERMVKWRIERGVVQQTESLVR 1436 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GF+ev++ rl+s+Fd++ELel+i G+ e iD++d+++nTeY+ggY+++++ KIAA1301 1437 GFYEVVDARLVSVFDARELELVIAGTAE-IDLSDWRNNTEYRGGYHDNHI 1485 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk +I+wFW +ve f++e+r +LLqFvTG+s++P +GF+ L+ GsnGp++ KIAA1301 1486 --VIRWFWAAVERFNNEQRLRLLQFVTGTSSIPYEGFASLR--GSNGPRR 1531 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG F++ek+ g+ + LP+AHTCFNrLdLPpY+S L+ekLl+A+ eet KIAA1301 1532 FCVEKW---GKITALPRAHTCFNRLDLPPYPSFSMLYEKLLTAV-EETST 1577 Fgle<-* Fgle KIAA1301 1578 FGLE 1581 PF00632.15.ls: domain 1 of 1, from 1276 to 1581: score 590.7, E = 1.3e-174 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +L+srelfnP+ygLFeys a+d+yt+qi+P s ++ KIAA1301 1276 FLVSRELFNPYYGLFEYS----------ANDTYTVQISPMSAF-VDN 1311 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD h+++F+F GrilGlAl ++ lld++F+r+FYK LL + ++l+Dle +D KIAA1301 1312 HHEWFRFSGRILGLALIHQYLLDAFFTRPFYKALL--RILCDLSDLEYLD 1359 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas e+++SL+w+++nd+ ++L+LtF+v+ee+ f KIAA1301 1360 EEFHQSLQWMKDNDIH------------DILDLTFTVNEEV---F----- 1389 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G+++++e LkP+G+nIpVT++NkkeY+e++v +r+++g+ +Q+e + + KIAA1301 1390 --GQITERE-LKPGGANIPVTEKNKKEYIERMVKWRIERGVVQQTESLVR 1436 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GF+ev++ rl+s+Fd++ELel+i G+ e iD++d+++nTeY+ggY+++++ KIAA1301 1437 GFYEVVDARLVSVFDARELELVIAGTAE-IDLSDWRNNTEYRGGYHDNHI 1485 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk +I+wFW +ve f++e+r +LLqFvTG+s++P +GF+ L+ GsnGp++ KIAA1301 1486 --VIRWFWAAVERFNNEQRLRLLQFVTGTSSIPYEGFASLR--GSNGPRR 1531 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG F++ek+ g+ + LP+AHTCFNrLdLPpY+S L+ekLl+A+ eet KIAA1301 1532 FCVEKW---GKITALPRAHTCFNRLDLPPYPSFSMLYEKLLTAV-EETST 1577 Fgle<-* Fgle KIAA1301 1578 FGLE 1581 //