hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22572904/chunk_1/iprscan-20080501-22572904.nocrc
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Query sequence: KIAA1299
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00252                                                  93.2      3e-23   1
SM00233                                                  38.3      1e-06   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1     306   437 ..     1    82 []    38.3    1e-06
SM00252     1/1     584   669 ..     1    87 []    93.2    3e-23

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 306 to 437: score 38.3, E = 1e-06
                   *->vikeGwLlkks..........................k.swkkryfv
                      v++e  L+ ++     +++ + +++++  ++++++++ ++w+k+ + 
    KIAA1299   306    VQREELLSFMGaeeaapdpagvgrgggvagppsggggQpQWQKCRLL 352  

                   Lfn.......gvLlyyksk...kpkgsipLsgc.svre.p.........c
                   L+++++++++++L ++ +++ ++p+ sip s+++ vr ++  + ++++++
    KIAA1299   353 LRSegeggggSRLEFFVPPkasRPRLSIPCSSItDVRTtTalempdrenT 402  

                   Feivt.dr.tlllqAeseeereeWvealqsaiaka<-*
                   F ++ ++ +++++ + ++++ + Wv+ +q+++++    
    KIAA1299   403 FVVKVeGPsEYIMETVDAQHVKAWVSDIQECLSPG    437  

SM00252: domain 1 of 1, from 584 to 669: score 93.2, E = 3e-23
                   *->epWYHGkisReeAEklLkne.ggpdGtFLvRdSesspgdyvLSvrvk
                      +pW+HG++sR +A +l ++++ g +G FLvR+Se+ +g+yvL++ ++
    KIAA1299   584    YPWFHGMLSRLKAAQLVLTGgTGSHGVFLVRQSETRRGEYVLTFNFQ 630  

                   gkvkHyrIrrtddgkfylggtprrkFpsL.eLvehYqknslg<-*
                   gk kH r+  +++g+ +++     +F+s+ +++eh++ ++++   
    KIAA1299   631 GKAKHLRLSLNEEGQCRVQH---LWFQSIfDMLEHFRVHPIP    669  

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