hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22572904/chunk_1/iprscan-20080501-22572904.nocrc
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Query sequence: KIAA1299
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08916.1.ls Phenylalanine zipper                           129.6    8.2e-36   1
PF08916.1.fs Phenylalanine zipper                           127.6    3.2e-35   1
PF00017.14.fs SH2 domain                                      52.4    1.8e-17   1
PF00169.19.fs PH domain                                       50.6      6e-15   1
PF00017.14.ls SH2 domain                                      54.4    3.5e-13   1
PF00169.19.ls PH domain                                       52.6    1.2e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08916.1.ls   1/1      83   141 ..     1    61 []   129.6  8.2e-36
PF08916.1.fs   1/1      83   141 ..     1    61 []   127.6  3.2e-35
PF00169.19.fs   1/1     306   435 ..     1    92 []    50.6    6e-15
PF00169.19.ls   1/1     306   435 ..     1    92 []    52.6  1.2e-12
PF00017.14.fs   1/1     586   663 ..     1    82 []    52.4  1.8e-17
PF00017.14.ls   1/1     586   663 ..     1    82 []    54.4  3.5e-13

Alignments of top-scoring domains:
PF08916.1.ls: domain 1 of 1, from 83 to 141: score 129.6, E = 8.2e-36
                   *->psWsEFCElHAraAArDfArqfrlFlrenLPPqyarPdaaasFSrrF
                      psW+EFCE+HAraAA+DfAr+frl+l+++  Pqya P+a+a+FSrrF
    KIAA1299    83    PSWREFCESHARAAALDFARRFRLYLASH--PQYAGPGAEAAFSRRF 127  

                   aelFlrHFerEvrr<-*
                   aelFl+HFe+Ev+r   
    KIAA1299   128 AELFLQHFEAEVAR    141  

PF08916.1.fs: domain 1 of 1, from 83 to 141: score 127.6, E = 3.2e-35
                   *->psWsEFCElHAraAArDfArqfrlFlrenLPPqyarPdaaasFSrrF
                      psW+EFCE+HAraAA+DfAr+frl+l+++  Pqya P+a+a+FSrrF
    KIAA1299    83    PSWREFCESHARAAALDFARRFRLYLASH--PQYAGPGAEAAFSRRF 127  

                   aelFlrHFerEvrr<-*
                   aelFl+HFe+Ev+r   
    KIAA1299   128 AELFLQHFEAEVAR    141  

PF00169.19.fs: domain 1 of 1, from 306 to 435: score 50.6, E = 6e-15
                   *->vikeGwLlkkg.........................gkkswkkRyfv
                      v +e  L+ +g ++  +++ + +++++  +++++++g ++w+k+ + 
    KIAA1299   306    VQREELLSFMGaeeaapdpagvgrgggvagppsgggGQPQWQKCRLL 352  

                   Lfd.......dvLlyykdkk.kkpkgsipLsgi.qvtkvpdn...krknc
                   L+++++++++++L+++ ++k ++p+ sip s+i+ v+++++ + ++r+n+
    KIAA1299   353 LRSegeggggSRLEFFVPPKaSRPRLSIPCSSItDVRTTTALempDRENT 402  

                   Feirt.dretlllqaeseeerkeWvkaiqsair<-*
                   F+++ +++ +++ ++ ++++ k Wv++iq++++   
    KIAA1299   403 FVVKVeGPSEYIMETVDAQHVKAWVSDIQECLS    435  

PF00169.19.ls: domain 1 of 1, from 306 to 435: score 52.6, E = 1.2e-12
                   *->vikeGwLlkkg.........................gkkswkkRyfv
                      v +e  L+ +g ++  +++ + +++++  +++++++g ++w+k+ + 
    KIAA1299   306    VQREELLSFMGaeeaapdpagvgrgggvagppsgggGQPQWQKCRLL 352  

                   Lfd.......dvLlyykdkk.kkpkgsipLsgi.qvtkvpdn...krknc
                   L+++++++++++L+++ ++k ++p+ sip s+i+ v+++++ + ++r+n+
    KIAA1299   353 LRSegeggggSRLEFFVPPKaSRPRLSIPCSSItDVRTTTALempDRENT 402  

                   Feirt.dretlllqaeseeerkeWvkaiqsair<-*
                   F+++ +++ +++ ++ ++++ k Wv++iq++++   
    KIAA1299   403 FVVKVeGPSEYIMETVDAQHVKAWVSDIQECLS    435  

PF00017.14.fs: domain 1 of 1, from 586 to 663: score 52.4, E = 1.8e-17
                   *->WyhGkIsRkeAErlLlnp.ggkdGtFLvReSestpGdYtLSVrddgp
                      W+hG +sR +A +l l +++g +G FLvR+Se+  G+Y+L++ ++g 
    KIAA1299   586    WFHGMLSRLKAAQLVLTGgTGSHGVFLVRQSETRRGEYVLTFNFQG- 631  

                   qgdrVkHyrIqsldnggyyitggvkFssLpeLvehY<-*
                      + kH r   +++g  ++     F+s+ ++ eh+   
    KIAA1299   632 ---KAKHLRLSLNEEG-QCRVQHLWFQSIFDMLEHF    663  

PF00017.14.ls: domain 1 of 1, from 586 to 663: score 54.4, E = 3.5e-13
                   *->WyhGkIsRkeAErlLlnp.ggkdGtFLvReSestpGdYtLSVrddgp
                      W+hG +sR +A +l l +++g +G FLvR+Se+  G+Y+L++ ++g 
    KIAA1299   586    WFHGMLSRLKAAQLVLTGgTGSHGVFLVRQSETRRGEYVLTFNFQG- 631  

                   qgdrVkHyrIqsldnggyyitggvkFssLpeLvehY<-*
                      + kH r   +++g  ++     F+s+ ++ eh+   
    KIAA1299   632 ---KAKHLRLSLNEEG-QCRVQHLWFQSIFDMLEHF    663  

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