hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22554292/chunk_1/iprscan-20080501-22554292.nocrc
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Query sequence: KIAA1298
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00195                                                 120.3    2.2e-31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00195    1/1       1   135 [.     1   172 []   120.3  2.2e-31

Alignments of top-scoring domains:
SM00195: domain 1 of 1, from 1 to 135: score 120.3, E = 2.2e-31
                   *->gpseilphlYLGsysdaseanlallkklgIthviNvteevpnnfelk
                           + + YL+  +  s + l ++    +++++Nvt+e++n     
    KIAA1298     1    -----TMRCYLSWDRWTS-PPLSSIIFISVDYILNVTREIDN----- 36   

                   kkndryytneyiskgsgftylqiPnvdDIyyhiawntetkiskyleeave
                                +++ f y +i  v D       +++t+++++++ea+ 
    KIAA1298    37 ------------FFPGLFAYHNIR-VYD-------EETTDLLAHWNEAYH 66   

                   fIedaekkggkVLVHCqAGvSRSAtlviAYLMktrnlslrdAydfvyvYh
                   fI++a++++ k+LVHC++GvSRSA+ viAY Mk ++++l+ Ay++v    
    KIAA1298    67 FINKAKRNHSKCLVHCKMGVSRSASTVIAYAMKEFGWPLEKAYNYV---- 112  

                   ikerRcpiisPNfgFlrQLieyerk<-*
                    k++R +i +PN+gF+rQL eye +   
    KIAA1298   113 -KQKR-SITRPNAGFMRQLSEYEGI    135  

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