hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22554292/chunk_1/iprscan-20080501-22554292.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1298 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00782.11.fs Dual specificity phosphatase, catalytic doma 132.5 8e-38 1 PF00782.11.ls Dual specificity phosphatase, catalytic doma 116.6 6.4e-32 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00782.11.ls 1/1 3 135 .. 1 173 [] 116.6 6.4e-32 PF00782.11.fs 1/1 23 135 .. 29 173 .] 132.5 8e-38 Alignments of top-scoring domains: PF00782.11.ls: domain 1 of 1, from 3 to 135: score 116.6, E = 6.4e-32 *->gpveilphnlYLGsystasadlaflsklgItyviNvteevpnpfelc + + + l + +++y++Nvt+e++n KIAA1298 3 RCYLSWDR------WTSPP--LSSIIFISVDYILNVTREIDN----- 36 kNdRhyteayflknsgilylriPhveDhIeYyhiawnhetkiskylpeav + ++ + y +i v D +++t++ ++ +ea+ KIAA1298 37 -----------FFPGLFAYHNIR-VYD---------EETTDLLAHWNEAY 65 eFIdkarqkggkVLVHCqAGiSRSAtliiAYLMktrnmslneAysfvyvY FI+ka++++ k+LVHC++G+SRSA+ +iAY Mk ++++l+ Ay++v KIAA1298 66 HFINKAKRNHSKCLVHCKMGVSRSASTVIAYAMKEFGWPLEKAYNYV--- 112 hikerRcpaisPNfgFlrQLleyerk<-* k++R ++ +PN+gF+rQL eye + KIAA1298 113 --KQKR-SITRPNAGFMRQLSEYEGI 135 PF00782.11.fs: domain 1 of 1, from 23 to 135: score 132.5, E = 8e-38 *->gItyviNvteevpnpfelckNdRhyteayflknsgilylriPhveDh +++y++Nvt+e++n + ++ + y +i v D KIAA1298 23 SVDYILNVTREIDN----------------FFPGLFAYHNIR-VYD- 51 IeYyhiawnhetkiskylpeaveFIdkarqkggkVLVHCqAGiSRSAtli +++t++ ++ +ea+ FI+ka++++ k+LVHC++G+SRSA+ + KIAA1298 52 --------EETTDLLAHWNEAYHFINKAKRNHSKCLVHCKMGVSRSASTV 93 iAYLMktrnmslneAysfvyvYhikerRcpaisPNfgFlrQLleyerk<- iAY Mk ++++l+ Ay++v k++R ++ +PN+gF+rQL eye + KIAA1298 94 IAYAMKEFGWPLEKAYNYV-----KQKR-SITRPNAGFMRQLSEYEGI 135 * KIAA1298 - - //