# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg04206.fasta.huge -Q ../query/KIAA1298.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1298, 738 aa vs ./tmplib.24314 library 1986767 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 10.2118+/-0.00917; mu= -8.3368+/- 0.622 mean_var=341.5865+/-81.028, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.069394 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1725 ( 1042 res) pf00950 (1042) 468 61.0 6.9e-10 KIAA1700 ( 690 res) fj15353 ( 690) 244 38.4 0.0029 >>KIAA1725 ( 1042 res) pf00950 (1042 aa) initn: 628 init1: 455 opt: 468 Z-score: 269.3 bits: 61.0 E(): 6.9e-10 Smith-Waterman score: 470; 25.731% identity (50.146% similar) in 684 aa overlap (72-726:1-623) 50 60 70 80 90 100 KIAA12 FAYHNIRVYDEETTDLLAHWNEAYHFINKAKRNHSKCLVHCKMGVSRSASTVIAYAMKEF :.. :::::::::::::::::::::::::. KIAA17 KKHGSKCLVHCKMGVSRSASTVIAYAMKEY 10 20 30 110 120 130 140 150 160 KIAA12 GWPLEKAYNYVKQKRSITRPNAGFMRQLSEYEGILDASKQRHNKLWRQQTDSSLQQPVDD :: :..::.:::..:..:.:: .::::: ::.::: :::::::::::...::.:.. . KIAA17 GWNLDRAYDYVKERRTVTKPNPSFMRQLEEYQGILLASKQRHNKLWRSHSDSDLSDHHEP 40 50 60 70 80 90 170 180 190 200 210 220 KIAA12 PAGPGDFLPETPDGTPESQLPFLDDAAQPGLGPPLPCCFRRLSDPLLPSPEDETGSLVHL :: : . : .:. . . ::.: : . ..:. .. : : KIAA17 ICKPGLELNKKDITTSADQIAEVKTMESH---PPIPPVF---VEHMVPQDANQKG----L 100 110 120 130 140 230 240 250 260 270 280 KIAA12 EDPEREALLEEAAPPAEVHRPARQPQQGSGLCEKDVKKKLEFGSPKGRSGSLLQVEETER :: :: .. :. . :. .. .:.... .: :.. : KIAA17 CTKERMICLEFTS---------REFHAGQ------IEDELNLNDINGCSSGCCLNESKFP 150 160 170 180 290 300 310 320 330 340 KIAA12 EEGLGAGRWGQLPTQLDQNLLNSENLNNNSKRSCPNGMEDDAIFGILN-KVKPSYKSCAD .. :.. : .. . . :. . .: ::. . .: .. : . . KIAA17 LDNCHASKALIQPGHVPE-------MANKFPDLTVEDLETDALKADMNVHLLPMEELTSP 190 200 210 220 230 350 360 370 380 390 400 KIAA12 CMYPTASGAPEASRERCEDPNAPAICTQPAFLPHITSSPVAHLASRSRVPEKPASGPTEP : : ::. :. : . .... . ... . : : :. KIAA17 LKDPPMSPDPES-------PSPQPSCQTE--ISDFSTDRIDFFSALEKFVE--LSQETRS 240 250 260 270 280 410 420 430 440 450 460 KIAA12 PPFLPPAGSRRADTSGPGAGAALEPPASLLEPSRETPKVLPKSLLLKNSHCDKNPPSTEV : . : . : : . . . . . ::. : .: : .. : : : KIAA17 RSF----SHSRMEELGGGRNESCRLSVVEVAPSKVTADDQRSSSLSNTPHA-----SEES 290 300 310 320 330 470 480 490 500 510 KIAA12 VIKEESSPKKDMKPAKDLRLLFSNESEKPTTNSYLMQHQESIIQ----LQKAGLVRK--- . ::.: . . :. .....::. . . .. . ::: : .: : . KIAA17 SMDEEQSKAISELVSPDI--FMQSHSENAISVKEIVTEIESISQGVGQIQLKGDILPNPC 340 350 360 370 380 390 520 530 540 550 560 KIAA12 HTKELERLKSVPADPA--PPSRDGPASRLEASI---PEESQDPAALHELGPLVMPSQAGS :: . . .. . . : : .. : . : : :: ..: . . : :. :. .. KIAA17 HTPKKNSIHELLLERAQTPENKPGHMEQDEDSCTAQPELAKDSGMCNPEGCLTTHSSIAD 400 410 420 430 440 450 570 580 590 600 610 620 KIAA12 DEKSEAAPASLE-GGSLKSPPPFFYRLD---HTSSFSKDFLKTICY---TPTSSSMSSNL :..: : . : :: : .: . : : . . . . .:: .:.:. KIAA17 LEEGEPAEGEQELQGSGMHPGAKWYPGSVRRATLEFEERLRQEQEHHGAAPTCTSLSTR- 460 470 480 490 500 510 630 640 650 660 670 680 KIAA12 TRSSSSDSIHSVRGKPGLVKQRTQEIETRLRLAGLTVSSPLKRSHSLAKLGSLTFSTEDL ..:..:: . . : . : :. . : : ..: .. :::. : .. KIAA17 -KNSKNDSSVADLAPKGKSDEAPPEHSFVLKEPEM---SKGKGKYSGSEAGSLSHSEQNA 520 530 540 550 560 570 690 700 710 720 730 KIAA12 SSEA----DPSTVADSQDTTLSESSFLHEPQGTPRD-----PAATSKPSGKPAPENLKSP . : . . . : :. :... .: :. .: : :. .. : : KIAA17 TVPAPRVLEFDHLPDPQEGPGSDTGTQQE--GVLKDLRTVIPYQESETQAVPLPLPKRVE 580 590 600 610 620 KIAA12 SWMSKS KIAA17 IIEYTHIVTSPNHTGPGSEIATSEKSGEQGLRKVNMEKSVTVLCTLDENLNRTLDPNQVS 630 640 650 660 670 680 >>KIAA1700 ( 690 res) fj15353 (690 aa) initn: 265 init1: 212 opt: 244 Z-score: 150.4 bits: 38.4 E(): 0.0029 Smith-Waterman score: 245; 31.651% identity (55.046% similar) in 218 aa overlap (24-229:210-405) 10 20 30 40 50 KIAA12 TMRCYLSWDRWTSPPLSSIIFISVDYILNVTREID--NFFPGLFAYHNIRV-Y . :.::.. .:.: : .:: KIAA17 ANIGPTRILPNLYLGCQRDVLNKELMQQNGIGYVLNASNTCPKPDFIP---ESHFLRVPV 180 190 200 210 220 230 60 70 80 90 100 KIAA12 DEETTDLLAHW-NEAYHFINKAKRNHSKCLVHCKMGVSRSASTVIAYAMKEFGWPLEKAY .. . . : ... ::.::: ... :::: :.::::. .::: ::.. :..:: KIAA17 NDSFCEKILPWLDKSVDFIEKAKASNGCVLVHCLAGISRSATIAIAYIMKRMDMSLDEAY 240 250 260 270 280 290 110 120 130 140 150 160 KIAA12 NYVKQKRSITRPNAGFMRQLSEYEGILDASKQRHNKLWRQQTDSSLQQ-PVDDPAGPGDF .::.:: :: .:. :: .:: :. .:. . :.:. .. : : KIAA17 RFVKEKRPTISPNFNFLGQLLDYE------KKIKNQTGASGPKSKLKLLHLEKPNEP--- 300 310 320 330 340 170 180 190 200 210 220 KIAA12 LPETPDGTPESQLPF----LDDAAQPGLG--PPLPCCFRRLSDPLLPSPEDETGSLVHLE .: . .: .:. :. :.:.. . : : : : : .:: . :: :: KIAA17 VPAVSEGGQKSETPLSPPCADSATSEAAGQRPVHPA-----SVPSVPSVQP---SL--LE 350 360 370 380 390 230 240 250 260 270 280 KIAA12 D-PEREALLEEAAPPAEVHRPARQPQQGSGLCEKDVKKKLEFGSPKGRSGSLLQVEETER : : .:: KIAA17 DSPLVQALSGLHLSADRLEDSNKLKRSFSLDIKSVSYSASMAASLHGFSSSEDALEYYKP 400 410 420 430 440 450 738 residues in 1 query sequences 1986767 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:16:43 2008 done: Thu Dec 18 15:16:44 2008 Total Scan time: 0.580 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]