hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22534620/chunk_1/iprscan-20080501-22534620.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1297 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 436.7 1.2e-126 2 SM00409 203.6 1.8e-56 6 SM00408 171.6 7.5e-47 6 SM00060 58.6 8.2e-13 2 SM00219 -34.7 5.5e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00408 1/6 1 67 [. 1 56 [] 24.4 0.016 SM00409 1/6 1 78 [. 1 58 [] 17.8 1.5 SM00409 2/6 89 173 .. 1 58 [] 50.1 3e-10 SM00408 2/6 95 162 .. 1 56 [] 37.9 1.4e-06 SM00409 3/6 213 297 .. 1 58 [] 22.3 0.069 SM00408 3/6 219 286 .. 1 56 [] 26.9 0.0029 SM00060 1/2 301 387 .. 1 69 [] 31.6 0.00011 SM00409 4/6 415 501 .. 1 58 [] 35.2 8.8e-06 SM00408 4/6 421 490 .. 1 56 [] 7.7 0.87 SM00409 5/6 510 594 .. 1 58 [] 35.3 8.2e-06 SM00408 5/6 516 583 .. 1 56 [] 29.4 0.0005 SM00220 1/2 620 873 .. 1 231 [] 227.4 1.2e-63 SM00409 6/6 1609 1694 .. 1 58 [] 42.9 4.2e-08 SM00408 6/6 1615 1683 .. 1 56 [] 45.4 7.7e-09 SM00060 2/2 1697 1776 .. 1 69 [] 27.0 0.0027 SM00219 1/1 1985 2237 .. 1 280 [] -34.7 5.5e-09 SM00220 2/2 1985 2237 .. 1 231 [] 209.3 3.5e-58 Alignments of top-scoring domains: SM00408: domain 1 of 6, from 1 to 67: score 24.4, E = 0.016 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL G+ + ++C ++g + ++ Wl +g l++ + + + ++ + L KIAA1297 1 --GEMALFECLVAGPTDVEVDWLCrGRLLQpallkckmhfdgRKCKL 45 tiknvsleDsGlYtCvArNsvg<-* +++v ++DsG+YtC+ + ++ KIAA1297 46 LLTSVHEDDSGVYTCKLSTAKD 67 SM00409: domain 1 of 6, from 1 to 78: score 17.8, E = 1.5 *->ppvtvkeGesvtLtC.as.....titWy................... Ge + ++C ++++++ ++ W+ +++ ++ + + + ++ KIAA1297 1 -------GEMALFEClVAgptdvEVDWLcrgrllqpallkckmhfdg 40 ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++ +L +++v ++Ds G+YtC ++ + + ++ +++LtV+ KIAA1297 41 rkckLLLtSVHEDDS---GVYTCKLStaKDELTC--SARLTVR 78 SM00409: domain 2 of 6, from 89 to 173: score 50.1, E = 3e-10 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++v+v eG +++ C++s+++++ +tW++ + + + + + ++++ KIAA1297 89 LEdVEVLEGRAARFDCkISgtpppVVTWThfgcpmeesenlrlrqdg 135 ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + ++L+I +v eD+ G Y a +++g+a++ +++L+V+ KIAA1297 136 glhsLHIaHVGSEDE---GLYAVSAVntHGQAHC--SAQLYVE 173 SM00408: domain 2 of 6, from 95 to 162: score 37.9, E = 1.4e-06 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt leG+++++ C+ sg p p +tW++ g p++++++ + +++++ +L+ KIAA1297 95 LEGRAARFDCKISGTPPPVVTWTHfGCPMEesenlrlrqdgGLHSLH 141 iknvsleDsGlYtCvArNsvg<-* i +v eD+GlY+ +A N +g KIAA1297 142 IAHVGSEDEGLYAVSAVNTHG 162 SM00409: domain 3 of 6, from 213 to 297: score 22.3, E = 0.069 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++++v + + L+C++++ + +ti+W++++++ +++++++ ++ + KIAA1297 213 LQdLEVGLAKEAMLECqVTglpypTISWFhnghriqssddrrmtqyr 259 ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + ++L+++ v p+++ G+Y + ++ g+a + ++L+V+ KIAA1297 260 dvhrLVFpAVGPQHA---GVYKSVIAnkLGKAAC--YAHLYVT 297 SM00408: domain 3 of 6, from 219 to 286: score 26.9, E = 0.0029 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + L+C ++g p p+I+W+++g +++++++++ ++ ++ +L KIAA1297 219 GLAKEAMLECQVTGLPYPTISWFHnGHRIQssddrrmtqyrDVHRLV 265 iknvsleDsGlYtCvArNsvg<-* + v + ++G+Y v N+ g KIAA1297 266 FPAVGPQHAGVYKSVIANKLG 286 SM00060: domain 1 of 2, from 301 to 387: score 31.6, E = 0.00011 *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY PgpP + ++v++vt + vtl+W+pP + + +++ ++Y KIAA1297 301 PGPPDGA--PQVVAVTGR------MVTLTWNPPrsldmaidpdSLTY 339 r......................ytltgLkPgaepwteYefrVrAvngnd +++ ++ ++++++ +++ ++++ tgL+ g + frV + KIAA1297 340 TvqhqvlgsdqwtalvtglrepgWAATGLRKG----VQHIFRVLSTTV-- 383 aGeg<-* + ++ KIAA1297 384 KSSS 387 SM00409: domain 4 of 6, from 415 to 501: score 35.2, E = 8.8e-06 *->pp.vtvkeGesvtLtC.as....titWy................... p v+v+eG++++ t ++++ ++ W++ ++ + + +++ KIAA1297 415 PDiVYVVEGQPASVTVtFNhveaQVVWRscrgallearagvyelsqp 461 ......LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++++ L+I +v++ D G tC+a++++g++++ ++tL+ KIAA1297 462 dddqycLRIcRVSRRDM---GALTCTARnrHGTQTC--SVTLELA 501 SM00408: domain 4 of 6, from 421 to 490: score 7.7, E = 0.87 *->leGqsVtLtCpasgdpvpnItWlk..gkplp.............sgs eGq+++ t + ++++ W+ +g l+ + + + ++++++ KIAA1297 421 VEGQPASVTVT-FNHVEAQVVWRScrGALLEaragvyelsqpddDQY 466 tLtiknvsleDsGlYtCvArNsvg<-* L+i +vs+ D G tC+ArN++g KIAA1297 467 CLRICRVSRRDMGALTCTARNRHG 490 SM00409: domain 5 of 6, from 510 to 594: score 35.3, E = 8.2e-06 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++v+v +Ge++++ +++++ + i Wy++ + +++ + KIAA1297 510 MEdVEVGAGETARFAVvVEgkplpDIMWYkdevlltesshvsfvyee 556 ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + +L++ + ++D G+YtC+a++ +g++s+ ++L V+ KIAA1297 557 necsLVVlSTGAQDG---GVYTCTAQnlAGEVSC--KAELAVH 594 SM00408: domain 5 of 6, from 516 to 583: score 29.4, E = 0.0005 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt G+++++ ++g+p p+I+W+k++ l ++++ + ++++ +L KIAA1297 516 GAGETARFAVVVEGKPLPDIMWYKdEVLLTesshvsfvyeeNECSLV 562 iknvsleDsGlYtCvArNsvg<-* + + D G+YtC+A+N +g KIAA1297 563 VLSTGAQDGGVYTCTAQNLAG 583 SM00220: domain 1 of 2, from 620 to 873: score 227.4, E = 1.2e-63 *->YellkklGkGaFGkVylardkktgrlvAiKvik......erilrEik Y++++++G+GaF+ ++ +++++g ++A K i+++ +++ +++rE + KIAA1297 620 YDIHQEIGRGAFSYLRRIVERSSGLEFAAKFIPsqakpkASARREAR 666 iLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrglr +L + +H+ + ++++fe + l +V+E+c +L++++ ++++ KIAA1297 667 LLARlQHDCVLYFHEAFERrRGLVIVTELCTE---ELLERIARKPT---- 709 kvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds......hvK E+e+r y+rQ+l+++ YLH+ +++H D+KPeN+L+ ++ ++++v KIAA1297 710 --VCEsEIRAYMRQVLEGIHYLHQSHVLHLDVKPENLLVWDgaageqQVR 757 laDFGlArql......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcil ++DFG A +l+++++++ + GTpe++APE++++++ ++ DiW +G++ KIAA1297 758 ICDFGNAQELtpgepqYCQYGTPEFVAPEIVnqsPVSG-VTDIWPVGVVA 806 yElltGkpPFp..qldlifkkig..............SpeakdLikklLv + +ltG PF ++++ +++ +i++++ ++++ + S+ea+ ++ k Lv KIAA1297 807 FLCLTGISPFVgeNDRTTLMNIRnynvafeettflslSREARGFLIKVLV 856 kdPekRlta.eaLedeldikaHPff<-* d + R+ta+e Le HP+f KIAA1297 857 QD-RLRPTAeETLE-------HPWF 873 SM00409: domain 6 of 6, from 1609 to 1694: score 42.9, E = 4.2e-08 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++++ eGe +tL C + + ++i+W++++++ ++ ++ + + KIAA1297 1609 LKdQVLLEGEAATLLClPAacpapHISWMkdkkslrsepsviivsck 1655 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++++ L I+++ + ++ G Y C at+ gs++s + t+ V KIAA1297 1656 dgrqlLSIpRAGKRHA---GLYECSATnvLGSITS--SCTVAVA 1694 SM00408: domain 6 of 6, from 1615 to 1683: score 45.4, E = 7.7e-09 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL leG+++tL C ++ p+p I+W k+ k+l ++++ + +++++ L KIAA1297 1615 LEGEAATLLCLPAACPAPHISWMKdKKSLRsepsviivsckdGRQLL 1661 tiknvsleDsGlYtCvArNsvg<-* +i ++ + ++GlY+C+A+N g KIAA1297 1662 SIPRAGKRHAGLYECSATNVLG 1683 SM00060: domain 2 of 2, from 1697 to 1776: score 27.0, E = 0.0027 *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr. Pg ++vt + + ++ + W+p ++ + ++++ r+ KIAA1297 1697 PGKLAP---PEVTQTYQD------TALVLWKPGdsrapctyTLERRv 1734 .................ytltgLkPgaepwteYefrVrAvngndaGeg<- ++++++ +++++ ++ y +t+L g + +frV++ n+ aG+g KIAA1297 1735 dgesvwhpvssgipdcyYNVTHLPVG----VTVRFRVACANR--AGQG 1776 * KIAA1297 - - SM00219: domain 1 of 1, from 1985 to 2237: score -34.7, E = 5.5e-09 *->ltlgkkLGeGaFGeVykGtlk....ieVAVKtLkeda...keeFlrE t++++ +G FG+V+ ++ + ++++ VA ++ ++a ++k l+E KIAA1297 1985 YTFLEEKARGRFGVVRACRENatgrTFVA--KIVPYAaegKPRVLQE 2029 akiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyL ++++ l +H+ i L+ + +++ l ++ E + + Ll L KIAA1297 2030 YEVLRTL--HHERIMSLHEAYITP-------RYLVLIAESCGNRELLCGL 2070 rknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvvK ++ + s +d +++Q +G +YL+ +++ H D+ N L++ ++ K KIAA1297 2071 SDRFR-YSEDDVATYMVQLLQGLDYLHGHHVLHLDIKPDNLLLAPDNALK 2119 IsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgkF I DFG + r+ g +t + mAPE k KIAA1297 2120 IVDFGSAQPYNPQ--------ALRPL---GHRT-GTLEFMAPEMVKGEPI 2157 tskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlpkP s++D+W GVl + i+ G +P ++ +++e +++ G+ KIAA1297 2158 GSATDIWGAGVLTY-IMLSGRSPFYE-----PDPQETEARIVGGRFDAFQ 2201 endlpiSsvtCPdelYdlMlqCWaedPedRPtF..selverl<-* + + ++ ++ P +RP+ s +++++ KIAA1297 2202 LY------PNTSQSATLFLRKVLSVHPWSRPSSclSVCHKEI 2237 SM00220: domain 2 of 2, from 1985 to 2237: score 209.3, E = 3.5e-58 *->YellkklGkGaFGkVylardkktgrlvAiKvik......erilrEik Y++l++ +G FG+V+ +r++ tgr + K+++ +++ r+l+E + KIAA1297 1985 YTFLEEKARGRFGVVRACRENATGRTFVAKIVPyaaegkPRVLQEYE 2031 iLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrglr +L+ +H+ I L++++ ++ +l l+ E c++ +L+ l +r r KIAA1297 2032 VLRTlHHERIMSLHEAYITpRYLVLIAESCGN--RELLCGLSDRFR---- 2075 kvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKlaDF +sE++++ y+ Q+l++L+YLH ++++H D+KP+N+LL ++ +K+ DF KIAA1297 2076 --YSEdDVATYMVQLLQGLDYLHGHHVLHLDIKPDNLLLAPdnALKIVDF 2123 GlArql........ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyE G+A ++++ ++ + GT+e+mAPE++++++ g a DiW G++ y+ KIAA1297 2124 GSAQPYnpqalrplGHRTGTLEFMAPEMVkgePIGS-ATDIWGAGVLTYI 2172 lltGkpPFp...qldlifkkig............SpeakdLikklLvkdP +l+G+ PF++++ +++ +++g++ + ++++S++a +++k L + P KIAA1297 2173 MLSGRSPFYepdPQETEARIVGgrfdafqlypntSQSATLFLRKVLSVHP 2222 ekRlta.eaLedeldikaHPff<-* R++ H + KIAA1297 2223 WSRPSScLSVC-------HKEI 2237 //