hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22520897/chunk_1/iprscan-20080501-22520897.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1296 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00018.18.ls SH3 domain 177.8 2.5e-50 3 PF00018.18.fs SH3 domain 172.0 1.4e-48 3 PF02208.7.ls Sorbin homologous domain 121.8 1.7e-33 1 PF02208.7.fs Sorbin homologous domain 119.9 6.6e-33 1 PF07653.7.ls Variant SH3 domain 119.6 8.1e-33 3 PF07653.7.fs Variant SH3 domain 114.3 2.8e-32 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02208.7.fs 1/1 278 323 .. 1 50 [] 119.9 6.6e-33 PF02208.7.ls 1/1 278 323 .. 1 50 [] 121.8 1.7e-33 PF00018.18.fs 1/3 577 631 .. 1 59 [] 57.0 8.2e-15 PF00018.18.ls 1/3 577 631 .. 1 59 [] 58.9 1.5e-14 PF07653.7.ls 1/3 578 631 .. 1 69 [] 56.5 8.1e-14 PF07653.7.fs 1/3 578 631 .. 1 69 [] 54.7 4e-15 PF00018.18.fs 2/3 651 707 .. 1 59 [] 58.3 3.6e-15 PF00018.18.ls 2/3 651 707 .. 1 59 [] 60.2 6.1e-15 PF07653.7.fs 2/3 652 707 .. 1 69 [] 29.8 6.3e-08 PF07653.7.ls 2/3 652 707 .. 1 69 [] 31.6 2.6e-06 PF00018.18.fs 3/3 757 813 .. 1 59 [] 56.7 1e-14 PF00018.18.ls 3/3 757 813 .. 1 59 [] 58.6 1.9e-14 PF07653.7.ls 3/3 758 813 .. 1 69 [] 31.6 2.6e-06 PF07653.7.fs 3/3 758 813 .. 1 69 [] 29.8 6.2e-08 Alignments of top-scoring domains: PF02208.7.fs: domain 1 of 1, from 278 to 323: score 119.9, E = 6.6e-33 *->vkaaqdlsivsvDEvGIPtAlRtTvdRsKDWYKTMFKQIHklnkPDd vk+ qdls+vs DEvGIP lR+T +RsKDWYKTMFKQIHkln+ Dd KIAA1296 278 VKSTQDLSDVSMDEVGIP--LRNT-ERSKDWYKTMFKQIHKLNR-DD 320 DsD<-* DsD KIAA1296 321 DSD 323 PF02208.7.ls: domain 1 of 1, from 278 to 323: score 121.8, E = 1.7e-33 *->vkaaqdlsivsvDEvGIPtAlRtTvdRsKDWYKTMFKQIHklnkPDd vk+ qdls+vs DEvGIP lR+T +RsKDWYKTMFKQIHkln+ Dd KIAA1296 278 VKSTQDLSDVSMDEVGIP--LRNT-ERSKDWYKTMFKQIHKLNR-DD 320 DsD<-* DsD KIAA1296 321 DSD 323 PF00018.18.fs: domain 1 of 3, from 577 to 631: score 57.0, E = 8.2e-15 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk + ++A++D++a++ EL+++kGD++++ ++ d +W++g+ + G+ KIAA1296 577 RPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQ-NWYEGEHH---GR 619 eGliPsNYVepv<-* +G++P +Y+e+ KIAA1296 620 VGIFPRTYIELL 631 PF00018.18.ls: domain 1 of 3, from 577 to 631: score 58.9, E = 1.5e-14 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk + ++A++D++a++ EL+++kGD++++ ++ d +W++g+ + G+ KIAA1296 577 RPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQ-NWYEGEHH---GR 619 eGliPsNYVepv<-* +G++P +Y+e+ KIAA1296 620 VGIFPRTYIELL 631 PF07653.7.ls: domain 1 of 3, from 578 to 631: score 56.5, E = 8.1e-14 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++ra +d++a + e L l+kGd+v+++ ++ d +w+e KIAA1296 578 PARAKFDFKA-QTLKE------LPLQKGDIVYIY----KQIDQNWYE 613 geslggGrrrRGlvPssaveel<-* ge +Gr+ G +P++++e l KIAA1296 614 GEH--HGRV--GIFPRTYIELL 631 PF07653.7.fs: domain 1 of 3, from 578 to 631: score 54.7, E = 4e-15 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++ra +d++a + e L l+kGd+v+++ ++ d +w+e KIAA1296 578 PARAKFDFKA-QTLKE------LPLQKGDIVYIY----KQIDQNWYE 613 geslggGrrrRGlvPssaveel<-* ge +Gr+ G +P++++e l KIAA1296 614 GEH--HGRV--GIFPRTYIELL 631 PF00018.18.fs: domain 2 of 3, from 651 to 707: score 58.3, E = 3.6e-15 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++A++ +++ + E+sF+kG+ it+l ++d+ +W++gr gt+ + KIAA1296 651 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDE-NWYEGRIPGTS-R 695 eGliPsNYVepv<-* +G++P +YV+ + KIAA1296 696 QGIFPITYVDVI 707 PF00018.18.ls: domain 2 of 3, from 651 to 707: score 60.2, E = 6.1e-15 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++A++ +++ + E+sF+kG+ it+l ++d+ +W++gr gt+ + KIAA1296 651 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDE-NWYEGRIPGTS-R 695 eGliPsNYVepv<-* +G++P +YV+ + KIAA1296 696 QGIFPITYVDVI 707 PF07653.7.fs: domain 2 of 3, from 652 to 707: score 29.8, E = 6.3e-08 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a +++++ d++ e+s++kG+ + ++ + d++w+e KIAA1296 652 EAIAKFNFNG--DTQV-----EMSFRKGERITLL----RQVDENWYE 687 geslggGrrrRGlvPssaveel<-* g+ g r G +P ++v ++ KIAA1296 688 GRIPGTSRQ--GIFPITYVDVI 707 PF07653.7.ls: domain 2 of 3, from 652 to 707: score 31.6, E = 2.6e-06 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a +++++ d++ e+s++kG+ + ++ + d++w+e KIAA1296 652 EAIAKFNFNG--DTQV-----EMSFRKGERITLL----RQVDENWYE 687 geslggGrrrRGlvPssaveel<-* g+ g r G +P ++v ++ KIAA1296 688 GRIPGTSRQ--GIFPITYVDVI 707 PF00018.18.fs: domain 3 of 3, from 757 to 813: score 56.7, E = 1e-14 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++ALY Y ++++dEL ++ GD++ v ek dd gW g + +t+ + KIAA1296 757 FSYQALYSYIPQNDDELELRDGDIVDVMEKCDD-GWFVGTSRRTK-Q 801 eGliPsNYVepv<-* +G +P NYV p KIAA1296 802 FGTFPGNYVKPL 813 PF00018.18.ls: domain 3 of 3, from 757 to 813: score 58.6, E = 1.9e-14 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++ALY Y ++++dEL ++ GD++ v ek dd gW g + +t+ + KIAA1296 757 FSYQALYSYIPQNDDELELRDGDIVDVMEKCDD-GWFVGTSRRTK-Q 801 eGliPsNYVepv<-* +G +P NYV p KIAA1296 802 FGTFPGNYVKPL 813 PF07653.7.ls: domain 3 of 3, from 758 to 813: score 31.6, E = 2.6e-06 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a+ +y++ ++ +e L l+ Gd+v V +k ddgw KIAA1296 758 SYQALYSYIP-QNDDE------LELRDGDIVDVM----EKCDDGWFV 793 geslgg..GrrrRGlvPssaveel<-* g+s +++++ G +P ++v++l KIAA1296 794 GTS--RrtKQF--GTFPGNYVKPL 813 PF07653.7.fs: domain 3 of 3, from 758 to 813: score 29.8, E = 6.2e-08 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a+ +y++ ++ +e L l+ Gd+v V +k ddgw KIAA1296 758 SYQALYSYIP-QNDDE------LELRDGDIVDVM----EKCDDGWFV 793 geslgg..GrrrRGlvPssaveel<-* g+s +++++ G +P ++v++l KIAA1296 794 GTS--RrtKQF--GTFPGNYVKPL 813 //