hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22484835/chunk_1/iprscan-20080501-22484835.nocrc
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Query sequence: KIAA1294
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00373.8.fs FERM domain (Band 4.1 family)                   86.4    6.9e-27   2
PF00373.8.ls FERM domain (Band 4.1 family)                   86.6    6.9e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00373.8.fs   1/2      34   165 ..     1   136 [.    68.6  2.5e-21
PF00373.8.ls   1/1      34   233 ..     1   210 []    86.6  6.9e-23
PF00373.8.fs   2/2     196   233 ..   173   210 .]    17.8  1.8e-05

Alignments of top-scoring domains:
PF00373.8.fs: domain 1 of 2, from 34 to 165: score 68.6, E = 2.5e-21
                   *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd
                      c v+llD+   e+ v++k + + LLd+V  h +l Ek+YFG +++D 
    KIAA1294    34    CQVHLLDDRKLELLVQPKLLAKELLDLVASHFNLKEKEYFGIAFTD- 79   

                   DnsskdsptWLdpsKkirkQdv.kkeePytLhFRvKFYpeDvpneLrqei
                       ++ ++WL +++ ++++d +kk  P+ L F v+FY+e     L +  
    KIAA1294    80 ---ETGHLNWLQLDRRVLEHDFpKKSGPVVLYFCVRFYIES-ISYLKDNA 125  

                   TrylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDY<-*
                   T  lffL +k  I  + + + +e   +LASY  Q   GD+   
    KIAA1294   126 TIELFFLNAKSCIYKELIDVDSEVVFELASYILQEAKGDF    165  

PF00373.8.ls: domain 1 of 1, from 34 to 233: score 86.6, E = 6.9e-23
                   *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd
                      c v+llD+   e+ v++k + + LLd+V  h +l Ek+YFG +++D 
    KIAA1294    34    CQVHLLDDRKLELLVQPKLLAKELLDLVASHFNLKEKEYFGIAFTD- 79   

                   DnsskdsptWLdpsKkirkQdv.kkeePytLhFRvKFYpeDvpneLrqei
                       ++ ++WL +++ ++++d +kk  P+ L F v+FY+e     L +  
    KIAA1294    80 ---ETGHLNWLQLDRRVLEHDFpKKSGPVVLYFCVRFYIES-ISYLKDNA 125  

                   TrylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRt
                   T  lffL +k  I  + + + +e   +LASY  Q   GD+ + +  ++  
    KIAA1294   126 TIELFFLNAKSCIYKELIDVDSEVVFELASYILQEAKGDFSSNEVVRS-- 173  

                   CLCYLsdekl..lPqRVlnqkqltkdd.....fEekIaelHkeHrGmspd
                        +++kl+ lP       q  k+ ++    E+++ e +k   G+++ 
    KIAA1294   174 -----DLKKLpaLP------TQALKEHpslayCEDRVIEHYKKLNGQTRG 212  

                   eAeleYLkiArdLemYGVdff<-*
                   +A ++Y  i  +L +YGV ++   
    KIAA1294   213 QAIVNYMSIVESLPTYGVHYY    233  

PF00373.8.fs: domain 2 of 2, from 196 to 233: score 17.8, E = 1.8e-05
                   *->EekIaelHkeHrGmspdeAeleYLkiArdLemYGVdff<-*
                      E+++ e +k   G+++ +A ++Y  i  +L +YGV ++   
    KIAA1294   196    EDRVIEHYKKLNGQTRGQAIVNYMSIVESLPTYGVHYY    233  

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