hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22471294/chunk_1/iprscan-20080501-22471294.nocrc
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Query sequence: KIAA1293
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00348.8.ls    Polyprenyl synthetase                   439.2   5.2e-129   1
PF00348.8.fs    Polyprenyl synthetase                   437.3   1.9e-128   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00348.8.fs      1/1     111   383 ..     1   285 []   437.3 1.9e-128
PF00348.8.ls      1/1     111   383 ..     1   285 []   439.2 5.2e-129

Alignments of top-scoring domains:
PF00348.8.fs: domain 1 of 1, from 111 to 383: score 437.3, E = 1.9e-128
                   *->llaamlyyllagGGKRiRPllvvlaaralGkevekldyevetetlla
                      +l+++l+y+ +gG K++R+l+vv+a+r l +e++k+d +++ +++++
    KIAA1293   111    RLKEVLEYNAIGG-KYNRGLTVVVAFREL-VEPRKQD-ADSLQRAWT 154  

                   lAaaiEmiHtaSLvHDDlPaMDnsdlRRGkPTcHkkFGeavAILaGDaLl
                   +++++E++++++Lv+DD+  MD s +RRG++ c+++ + ++ ++++Da+l
    KIAA1293   155 VGWCVELLQAFFLVADDI--MDSSLTRRGQI-CWYQKPGVGLDAINDANL 201  

                   srAfqlladldsphvrperkliaiseLanavgaqGevgGQllDlesegkg
                   ++A++++++++  ++r+++++++++eL+ ++ +q+e+g Q+lDl ++++g
    KIAA1293   202 LEACIYRLLKL--YCREQPYYLNLIELFLQSSYQTEIG-QTLDLLTAPQG 248  

                   evDLiditleeylrihryKTAaLSFeasvqlgaivAGadDeeeekaLkdf
                   +vDL+++t+++y++i++yKTA++SF++++++++++AG+d+e+e+ ++k++
    KIAA1293   249 NVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKI 298  

                   grdlGlaFQIvDDiLDltgdteelGKpvGsDlqeGKsTlpvllaLegnPa
                   ++++G++FQI+DD+LDl+gd+  +GK+ G+D+q++K++++v+++L++  a
    KIAA1293   299 LLEMGEFFQIQDDYLDLFGDPSVTGKI-GTDIQDNKCSWLVVQCLQR--A 345  

                   reeqrkllreaieqklseaalqgvaltkalealaeyie<-*
                   ++eq+++l+e+++qk+ e++++++al+++l+++a++ +   
    KIAA1293   346 TPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQ    383  

PF00348.8.ls: domain 1 of 1, from 111 to 383: score 439.2, E = 5.2e-129
                   *->llaamlyyllagGGKRiRPllvvlaaralGkevekldyevetetlla
                      +l+++l+y+ +gG K++R+l+vv+a+r l +e++k+d +++ +++++
    KIAA1293   111    RLKEVLEYNAIGG-KYNRGLTVVVAFREL-VEPRKQD-ADSLQRAWT 154  

                   lAaaiEmiHtaSLvHDDlPaMDnsdlRRGkPTcHkkFGeavAILaGDaLl
                   +++++E++++++Lv+DD+  MD s +RRG++ c+++ + ++ ++++Da+l
    KIAA1293   155 VGWCVELLQAFFLVADDI--MDSSLTRRGQI-CWYQKPGVGLDAINDANL 201  

                   srAfqlladldsphvrperkliaiseLanavgaqGevgGQllDlesegkg
                   ++A++++++++  ++r+++++++++eL+ ++ +q+e+g Q+lDl ++++g
    KIAA1293   202 LEACIYRLLKL--YCREQPYYLNLIELFLQSSYQTEIG-QTLDLLTAPQG 248  

                   evDLiditleeylrihryKTAaLSFeasvqlgaivAGadDeeeekaLkdf
                   +vDL+++t+++y++i++yKTA++SF++++++++++AG+d+e+e+ ++k++
    KIAA1293   249 NVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKI 298  

                   grdlGlaFQIvDDiLDltgdteelGKpvGsDlqeGKsTlpvllaLegnPa
                   ++++G++FQI+DD+LDl+gd+  +GK+ G+D+q++K++++v+++L++  a
    KIAA1293   299 LLEMGEFFQIQDDYLDLFGDPSVTGKI-GTDIQDNKCSWLVVQCLQR--A 345  

                   reeqrkllreaieqklseaalqgvaltkalealaeyie<-*
                   ++eq+++l+e+++qk+ e++++++al+++l+++a++ +   
    KIAA1293   346 TPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQ    383  

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