# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ha00701.fasta.nr -Q ../query/KIAA1293.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1293, 420 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7825375 sequences Expectation_n fit: rho(ln(x))= 4.6458+/-0.000181; mu= 13.4983+/- 0.010 mean_var=63.9391+/-12.401, 0's: 36 Z-trim: 54 B-trim: 0 in 0/66 Lambda= 0.160395 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|215274250|sp|P14324.4|FPPS_HUMAN RecName: Full= ( 419) 2841 666.1 4.3e-189 gi|55728661|emb|CAH91070.1| hypothetical protein [ ( 419) 2792 654.7 1.1e-185 gi|109017246|ref|XP_001116071.1| PREDICTED: farnes ( 419) 2778 651.5 1.1e-184 gi|194036063|ref|XP_001929119.1| PREDICTED: simila ( 421) 2546 597.8 1.5e-168 gi|73961593|ref|XP_537252.2| PREDICTED: similar to ( 420) 2520 591.8 1e-166 gi|84708902|gb|AAI11257.1| FDPS protein [Bos tauru ( 421) 2490 584.8 1.2e-164 gi|149048094|gb|EDM00670.1| rCG62519, isoform CRA_ ( 420) 2413 567.0 2.8e-159 gi|148683291|gb|EDL15238.1| mCG17543, isoform CRA_ ( 420) 2402 564.5 1.7e-158 gi|209571584|ref|NP_001129294.1| farnesyl diphosph ( 353) 2339 549.8 3.5e-154 gi|71042523|pdb|1ZW5|A Chain A, X-Ray Structure Of ( 355) 2339 549.8 3.6e-154 gi|160286554|pdb|3B7L|A Chain A, Human Farnesyl Di ( 356) 2339 549.8 3.6e-154 gi|61680786|pdb|1YQ7|A Chain A, Human Farnesyl Dip ( 374) 2339 549.8 3.7e-154 gi|158430745|pdb|2RAH|A Chain A, Human Fdps Syntha ( 378) 2339 549.9 3.7e-154 gi|157835943|pdb|2QIS|A Chain A, Crystal Structure ( 374) 2336 549.2 6e-154 gi|183448387|pdb|3CP6|A Chain A, Crystal Structure ( 376) 2334 548.7 8.3e-154 gi|182399|gb|AAA52423.1| farnesyl pyrophosphate sy ( 353) 2333 548.4 9.3e-154 gi|114560101|ref|XP_001160023.1| PREDICTED: farnes ( 354) 2327 547.1 2.4e-153 gi|90109287|pdb|2F7M|F Chain F, Crystal Structure ( 350) 2302 541.3 1.3e-151 gi|182405|gb|AAA35820.1| farnesyl pyrophosphate sy ( 346) 2290 538.5 9.1e-151 gi|90078142|dbj|BAE88751.1| unnamed protein produc ( 353) 2276 535.2 8.7e-150 gi|165934064|gb|ABY74558.1| farnesyl diphosphate s ( 353) 2150 506.1 5.2e-141 gi|111305075|gb|AAI20219.1| FDPS protein [Bos taur ( 376) 2149 505.9 6.4e-141 gi|75054285|sp|Q8WMY2.1|FPPS_BOVIN RecName: Full=F ( 353) 2123 499.8 3.9e-139 gi|114560079|ref|XP_513857.2| PREDICTED: similar t ( 867) 2115 498.3 2.8e-138 gi|1160178|emb|CAA87327.1| farnesyl pyrophosphate ( 348) 2074 488.5 1e-135 gi|109017242|ref|XP_001115980.1| PREDICTED: nesca ( 867) 2069 487.7 4.5e-135 gi|120478|sp|P05369.2|FPPS_RAT RecName: Full=Farne ( 353) 2022 476.5 4.3e-132 gi|60392303|sp|Q920E5.1|FPPS_MOUSE RecName: Full=F ( 353) 2021 476.2 5e-132 gi|204092|gb|AAA41143.1| farnesyl pyrophosphate sy ( 353) 2020 476.0 5.9e-132 gi|109130476|ref|XP_001097788.1| PREDICTED: simila ( 380) 2020 476.0 6.2e-132 gi|74141499|dbj|BAE38529.1| unnamed protein produc ( 353) 2015 474.9 1.3e-131 gi|74183868|dbj|BAE24508.1| unnamed protein produc ( 353) 2012 474.2 2.1e-131 gi|56789674|gb|AAH87886.1| Farnesyl diphosphate sy ( 353) 2007 473.0 4.8e-131 gi|203582|gb|AAA40960.1| cholesterol-regulated pro ( 344) 1882 444.1 2.4e-122 gi|109510511|ref|XP_228802.4| PREDICTED: hypotheti ( 353) 1859 438.8 9.7e-121 gi|32527731|gb|AAP86267.1| Ac2-125 [Rattus norvegi ( 879) 1821 430.3 8.5e-118 gi|157831115|pdb|1FPS|A Chain A, Crystal Structure ( 348) 1660 392.7 7e-107 gi|3915686|sp|P08836.2|FPPS_CHICK RecName: Full=Fa ( 367) 1660 392.7 7.3e-107 gi|114618461|ref|XP_001135269.1| PREDICTED: hypoth ( 298) 1642 388.5 1.1e-105 gi|119573460|gb|EAW53075.1| farnesyl diphosphate s ( 248) 1641 388.2 1.1e-105 gi|157834060|pdb|1UBX|A Chain A, Structure Of Farn ( 367) 1638 387.6 2.5e-105 gi|157834058|pdb|1UBV|A Chain A, Structure Of Farn ( 367) 1631 386.0 7.6e-105 gi|46249832|gb|AAH68912.1| MGC83119 protein [Xenop ( 348) 1616 382.5 8.1e-104 gi|114560099|ref|XP_001159738.1| PREDICTED: farnes ( 332) 1611 381.3 1.7e-103 gi|76779745|gb|AAI06511.1| MGC131256 protein [Xeno ( 348) 1602 379.3 7.7e-103 gi|59861885|gb|AAH90384.1| MGC108224 protein [Xeno ( 348) 1596 377.9 2e-102 gi|66911345|gb|AAH97112.1| Farnesyl diphosphate sy ( 356) 1454 345.0 1.6e-92 gi|53733369|gb|AAH83515.1| Fdps protein [Danio rer ( 359) 1453 344.8 1.9e-92 gi|209155566|gb|ACI34015.1| Farnesyl pyrophosphate ( 359) 1453 344.8 1.9e-92 gi|126348819|ref|XP_001373435.1| PREDICTED: simila ( 259) 1414 335.7 7.7e-90 >>gi|215274250|sp|P14324.4|FPPS_HUMAN RecName: Full=Farn (419 aa) initn: 2841 init1: 2841 opt: 2841 Z-score: 3551.0 bits: 666.1 E(): 4.3e-189 Smith-Waterman score: 2841; 100.000% identity (100.000% similar) in 419 aa overlap (2-420:1-419) 10 20 30 40 50 60 KIAA12 RMPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 MPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPR 10 20 30 40 50 70 80 90 100 110 120 KIAA12 ALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 ALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNA 60 70 80 90 100 110 130 140 150 160 170 180 KIAA12 IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRR 120 130 140 150 160 170 190 200 210 220 230 240 KIAA12 GQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 GQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTL 180 190 200 210 220 230 250 260 270 280 290 300 KIAA12 DLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 DLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILL 240 250 260 270 280 290 310 320 330 340 350 360 KIAA12 EMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 EMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQK 300 310 320 330 340 350 370 380 390 400 410 420 KIAA12 EAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 EAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 360 370 380 390 400 410 >>gi|55728661|emb|CAH91070.1| hypothetical protein [Pong (419 aa) initn: 2792 init1: 2792 opt: 2792 Z-score: 3489.7 bits: 654.7 E(): 1.1e-185 Smith-Waterman score: 2792; 98.091% identity (99.523% similar) in 419 aa overlap (2-420:1-419) 10 20 30 40 50 60 KIAA12 RMPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 MPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPR 10 20 30 40 50 70 80 90 100 110 120 KIAA12 ALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNA ::::::::::::.::::::::::::::::::::.:::::::::: ::::::::::::::: gi|557 ALCSSLRMNGDQKSDVYAQEKQDFVQHFSQIVRMLTEDEMGHPETGDAIARLKEVLEYNA 60 70 80 90 100 110 130 140 150 160 170 180 KIAA12 IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRR :::::.:::::::::::::.:::::::::::: ::::::::::::::::::::::::::: gi|557 IGGKYHRGLTVVVAFRELVQPRKQDADSLQRARTVGWCVELLQAFFLVADDIMDSSLTRR 120 130 140 150 160 170 190 200 210 220 230 240 KIAA12 GQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 GQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTL 180 190 200 210 220 230 250 260 270 280 290 300 KIAA12 DLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILL ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 DLITAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILL 240 250 260 270 280 290 310 320 330 340 350 360 KIAA12 EMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 EMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQK 300 310 320 330 340 350 370 380 390 400 410 420 KIAA12 EAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: gi|557 EAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAIFLGLARKIYKRRK 360 370 380 390 400 410 >>gi|109017246|ref|XP_001116071.1| PREDICTED: farnesyl d (419 aa) initn: 2807 init1: 2778 opt: 2778 Z-score: 3472.2 bits: 651.5 E(): 1.1e-184 Smith-Waterman score: 2778; 97.375% identity (99.045% similar) in 419 aa overlap (2-420:1-419) 10 20 30 40 50 60 KIAA12 RMPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPR 10 20 30 40 50 70 80 90 100 110 120 KIAA12 ALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNA ::::::::::::.::::::::::::::::::::::::::::::: ::::::::::::::: gi|109 ALCSSLRMNGDQKSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPETGDAIARLKEVLEYNA 60 70 80 90 100 110 130 140 150 160 170 180 KIAA12 IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRR :::::.::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|109 IGGKYHRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVTDDIMDSSLTRR 120 130 140 150 160 170 190 200 210 220 230 240 KIAA12 GQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTL ::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: gi|109 GQICWYQKPGVGLDAINDAILLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTL 180 190 200 210 220 230 250 260 270 280 290 300 KIAA12 DLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILL ::.::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DLITAPQGNVDLGRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILL 240 250 260 270 280 290 310 320 330 340 350 360 KIAA12 EMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQK ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|109 EMGEFFQIQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQK 300 310 320 330 340 350 370 380 390 400 410 420 KIAA12 EAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK ::::::::::::::::: ::::::::::::::::::::::::::::.:::::::::::.: gi|109 EAEKVARVKALYEELDLQAVFLQYEEDSYSHIMALIEQYAAPLPPAIFLGLARKIYKRKK 360 370 380 390 400 410 >>gi|194036063|ref|XP_001929119.1| PREDICTED: similar to (421 aa) initn: 2544 init1: 2291 opt: 2546 Z-score: 3182.0 bits: 597.8 E(): 1.5e-168 Smith-Waterman score: 2546; 87.381% identity (96.667% similar) in 420 aa overlap (2-420:2-421) 10 20 30 40 50 KIAA12 RMPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVL-AWHSARCWCQAWTEEP .::::::::::.:::::: :.::::::: ::::::::: ::: :::::::::::::::: gi|194 MLPLSRWLRSVGLFLLPAPCWVPRERWLGPLRRPSLVHGCPVLGAWHSARCWCQAWTEEP 10 20 30 40 50 60 60 70 80 90 100 110 KIAA12 RALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYN ::. :::::::::. :.::.:.:::.:::::::.::::...::::::::.:::::::::: gi|194 RAFYSSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYN 70 80 90 100 110 120 120 130 140 150 160 170 KIAA12 AIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTR ..:::::::.::.:.:::::::::::::::::: :::::.::::::::::::: :::::: gi|194 VVGGKYNRGITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTR 130 140 150 160 170 180 180 190 200 210 220 230 KIAA12 RGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQT ::: :::.:::.:::::::: :::::::::::.:::::::::::::::::.::.:::::: gi|194 RGQTCWYRKPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQT 190 200 210 220 230 240 240 250 260 270 280 290 KIAA12 LDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKIL :::...::::::: :::::::::::::::::::::::.:::::::::::::::::::::: gi|194 LDLIAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKIL 250 260 270 280 290 300 300 310 320 330 340 350 KIAA12 LEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQ .:::::::::::::::::::::::::::::::::::::::::::::.::: :::.::::: gi|194 MEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQ 310 320 330 340 350 360 360 370 380 390 400 410 KIAA12 KEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRR :.:::::::::::::..: :::::::::::::.:.::::::::::::.:: ::.:::::: gi|194 KDAEKVARVKALYEEMNLQAVFLQYEEDSYSHLMGLIEQYAAPLPPAIFLELAHKIYKRR 370 380 390 400 410 420 420 KIAA12 K : gi|194 K >>gi|73961593|ref|XP_537252.2| PREDICTED: similar to far (420 aa) initn: 2548 init1: 2266 opt: 2520 Z-score: 3149.5 bits: 591.8 E(): 1e-166 Smith-Waterman score: 2520; 87.143% identity (95.714% similar) in 420 aa overlap (2-420:1-420) 10 20 30 40 50 KIAA12 RMPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVL-AWHSARCWCQAWTEEP ::::::::::::::::: ::::::::: ::::::::.::: ::::::::::.::::: gi|739 MPLSRWLRSVGVFLLPASCWAPRERWLGLHRRPSLVHGFPVLGAWHSARCWCQTWTEEP 10 20 30 40 50 60 70 80 90 100 110 KIAA12 RALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYN ::: :::::::::. :.::: .:::.::: :::..:::: ::::: :::::::::::::: gi|739 RALYSSLRMNGDQKLDAYAQARQDFIQHFPQIVKILTEDGMGHPETGDAIARLKEVLEYN 60 70 80 90 100 110 120 130 140 150 160 170 KIAA12 AIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTR :.::::.:::::..::.:::::::::: ::.:: :::::::::::::::.:::::::::: gi|739 AVGGKYQRGLTVLIAFQELVEPRKQDAASLRRALTVGWCVELLQAFFLVSDDIMDSSLTR 120 130 140 150 160 170 180 190 200 210 220 230 KIAA12 RGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQT :::::::::::.:::::::: :::::::::::.::::::::::::::::::::::::::: gi|739 RGQICWYQKPGIGLDAINDALLLEACIYRLLKVYCREQPYYLNLIELFLQSSYQTEIGQT 180 190 200 210 220 230 240 250 260 270 280 290 KIAA12 LDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKIL :::.:::::.::: :::::::::::::::::::::::.:::::::::::::::::::::: gi|739 LDLITAPQGSVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKIL 240 250 260 270 280 290 300 310 320 330 340 350 KIAA12 LEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQ ::::::::::::.:::::::::::::::::::::::::::::::.:.::: ..:.::::: gi|739 LEMGEFFQIQDDFLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQQASPEQRKVLQENYGQ 300 310 320 330 340 350 360 370 380 390 400 410 KIAA12 KEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRR ::::::::::::::::.::::: ::::::::..:.:::. :.:::::.:::::..::::. gi|739 KEAEKVARVKALYEELNLPAVFTQYEEDSYSRLMSLIERCASPLPPAIFLGLAHNIYKRK 360 370 380 390 400 410 420 KIAA12 K : gi|739 K 420 >>gi|84708902|gb|AAI11257.1| FDPS protein [Bos taurus] (421 aa) initn: 2518 init1: 2276 opt: 2490 Z-score: 3112.0 bits: 584.8 E(): 1.2e-164 Smith-Waterman score: 2490; 86.667% identity (95.714% similar) in 420 aa overlap (2-420:2-421) 10 20 30 40 50 KIAA12 RMPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVL-AWHSARCWCQAWTEEP .::::::::::::::::: :.:..: :: :.::.: :: ::: :::::::: ::::::: gi|847 MLPLSRWLRSVGVFLLPAPCWVPQDRLLGPLQRPTLGHGCPVLGAWHSARCWRQAWTEEP 10 20 30 40 50 60 60 70 80 90 100 110 KIAA12 RALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYN ::. :::::::::. :.::::.:::.:::::::.::::...:::::::::.::::::::: gi|847 RAFYSSLRMNGDQKLDAYAQERQDFIQHFSQIVKVLTEEDIGHPEIGDAITRLKEVLEYN 70 80 90 100 110 120 120 130 140 150 160 170 KIAA12 AIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTR :::::::::::::..::::::: ::: :::::: :::::::::::::::.:::::::::: gi|847 AIGGKYNRGLTVVITFRELVEPGKQDPDSLQRALTVGWCVELLQAFFLVSDDIMDSSLTR 130 140 150 160 170 180 180 190 200 210 220 230 KIAA12 RGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQT ::: :::::::.:::::::: :::. ::::::::::::::::.::::::::::::::::: gi|847 RGQTCWYQKPGIGLDAINDAFLLESSIYRLLKLYCREQPYYLDLIELFLQSSYQTEIGQT 190 200 210 220 230 240 240 250 260 270 280 290 KIAA12 LDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKIL :::.::::::::: :.:::::::::::::::::::::.::::::::::::::::.::::: gi|847 LDLITAPQGNVDLGRYTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHAHAKKIL 250 260 270 280 290 300 300 310 320 330 340 350 KIAA12 LEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQ :::::::::::::::::::::.::::::::::::::::::::::::.::: :::.::::: gi|847 LEMGEFFQIQDDYLDLFGDPSMTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQ 310 320 330 340 350 360 360 370 380 390 400 410 KIAA12 KEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRR :::::::::::::::..: ::..:::::::.:::.::::::::::::.:::::.:::::. gi|847 KEAEKVARVKALYEEMNLSAVYMQYEEDSYNHIMGLIEQYAAPLPPAIFLGLAQKIYKRK 370 380 390 400 410 420 420 KIAA12 K : gi|847 K >>gi|149048094|gb|EDM00670.1| rCG62519, isoform CRA_b [R (420 aa) initn: 2169 init1: 2169 opt: 2413 Z-score: 3015.7 bits: 567.0 E(): 2.8e-159 Smith-Waterman score: 2413; 84.524% identity (94.048% similar) in 420 aa overlap (2-420:1-420) 10 20 30 40 50 KIAA12 RMPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVL-AWHSARCWCQAWTEEP :::::::::.:::::::: ::::::::: :.::::..: ::: :::::: :::.::::: gi|149 MPLSRWLRSLGVFLLPAPCWAPRERWLGYLQRPSLAYGCPVLGAWHSARWWCQVWTEEP 10 20 30 40 50 60 70 80 90 100 110 KIAA12 RALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYN ::. ::.::::::. ::. ::::.:.:::::::.::::::.:::: ::::.:.::::::: gi|149 RAFSSSVRMNGDQKLDVHNQEKQNFIQHFSQIVKVLTEDELGHPEKGDAITRIKEVLEYN 60 70 80 90 100 110 120 130 140 150 160 170 KIAA12 AIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTR ..::::::::::: .:.::::::::::.::::: ::::::::::::::: ::::::: :: gi|149 TVGGKYNRGLTVVQTFQELVEPRKQDAESLQRALTVGWCVELLQAFFLVLDDIMDSSHTR 120 130 140 150 160 170 180 190 200 210 220 230 KIAA12 RGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQT :::::::::::.:::::::: :::: ::::::.:::::::::::.::::::::::::::: gi|149 RGQICWYQKPGIGLDAINDALLLEAAIYRLLKFYCREQPYYLNLLELFLQSSYQTEIGQT 180 190 200 210 220 230 240 250 260 270 280 290 KIAA12 LDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKIL :::.:::::.::: :.:::::::::::::::::::::::::::::::::::::::: ::: gi|149 LDLITAPQGQVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANALKIL 240 250 260 270 280 290 300 310 320 330 340 350 KIAA12 LEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQ :::::::::::::::::::::::::.::::::::::::::::: ::::.: :::.::::: gi|149 LEMGEFFQIQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLRATPQQRQILEENYGQ 300 310 320 330 340 350 360 370 380 390 400 410 KIAA12 KEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRR :. ::::::::::::::: .::..::::::... .:::: .:::::..:: :: :::::: gi|149 KDPEKVARVKALYEELDLRSVFFKYEEDSYNRLKSLIEQCSAPLPPSIFLELANKIYKRR 360 370 380 390 400 410 420 KIAA12 K : gi|149 K 420 >>gi|148683291|gb|EDL15238.1| mCG17543, isoform CRA_a [M (420 aa) initn: 2170 init1: 2170 opt: 2402 Z-score: 3002.0 bits: 564.5 E(): 1.7e-158 Smith-Waterman score: 2402; 83.571% identity (94.048% similar) in 420 aa overlap (2-420:1-420) 10 20 30 40 50 KIAA12 RMPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVL-AWHSARCWCQAWTEEP :::: ::::.:::::::: ::::::::: :.::::..: ::: :::::: :::.::::: gi|148 MPLSCWLRSLGVFLLPAPCWAPRERWLGFLQRPSLAYGCPVLGAWHSARWWCQVWTEEP 10 20 30 40 50 60 70 80 90 100 110 KIAA12 RALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYN ::. ::.::::.:. :.: ::::.:.:::::::.:::: :.::::::::::::::::::: gi|148 RAFSSSVRMNGNQKLDAYNQEKQNFIQHFSQIVKVLTEKELGHPEIGDAIARLKEVLEYN 60 70 80 90 100 110 120 130 140 150 160 170 KIAA12 AIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTR :.::::::::::: ::.:::::.::::.::::: :::::::::::::::.:::::::::: gi|148 ALGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQAFFLVSDDIMDSSLTR 120 130 140 150 160 170 180 190 200 210 220 230 KIAA12 RGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQT :::::::::::.:::::::: :::: ::::::.:::::::::::.::::::::::::::: gi|148 RGQICWYQKPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLLELFLQSSYQTEIGQT 180 190 200 210 220 230 240 250 260 270 280 290 KIAA12 LDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKIL :::.:::::.::: :.:::::::::::::::::::::::::::::::::::::::: ::: gi|148 LDLMTAPQGHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANALKIL 240 250 260 270 280 290 300 310 320 330 340 350 KIAA12 LEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQ .:::::::.::::::::::::::::.::::::::::::::::: ::.:.: :::.::::: gi|148 MEMGEFFQVQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLRASPQQRQILEENYGQ 300 310 320 330 340 350 360 370 380 390 400 410 KIAA12 KEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRR :. ::::::::::: ::: ..:..::::::... .:::: .:::::..:. :: :::::: gi|148 KDPEKVARVKALYEALDLQSAFFKYEEDSYNRLKSLIEQCSAPLPPSIFMELANKIYKRR 360 370 380 390 400 410 420 KIAA12 K : gi|148 K 420 >>gi|209571584|ref|NP_001129294.1| farnesyl diphosphate (353 aa) initn: 2339 init1: 2339 opt: 2339 Z-score: 2924.2 bits: 549.8 E(): 3.5e-154 Smith-Waterman score: 2339; 100.000% identity (100.000% similar) in 353 aa overlap (68-420:1-353) 40 50 60 70 80 90 KIAA12 HGYPVLAWHSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTE :::::::::::::::::::::::::::::: gi|209 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTE 10 20 30 100 110 120 130 140 150 KIAA12 DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|209 DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW 40 50 60 70 80 90 160 170 180 190 200 210 KIAA12 CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|209 CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ 100 110 120 130 140 150 220 230 240 250 260 270 KIAA12 PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|209 PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI 160 170 180 190 200 210 280 290 300 310 320 330 KIAA12 AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|209 AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL 220 230 240 250 260 270 340 350 360 370 380 390 KIAA12 VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|209 VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE 280 290 300 310 320 330 400 410 420 KIAA12 QYAAPLPPAVFLGLARKIYKRRK ::::::::::::::::::::::: gi|209 QYAAPLPPAVFLGLARKIYKRRK 340 350 >>gi|71042523|pdb|1ZW5|A Chain A, X-Ray Structure Of Far (355 aa) initn: 2339 init1: 2339 opt: 2339 Z-score: 2924.1 bits: 549.8 E(): 3.6e-154 Smith-Waterman score: 2339; 100.000% identity (100.000% similar) in 353 aa overlap (68-420:3-355) 40 50 60 70 80 90 KIAA12 HGYPVLAWHSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTE :::::::::::::::::::::::::::::: gi|710 GHMNGDQNSDVYAQEKQDFVQHFSQIVRVLTE 10 20 30 100 110 120 130 140 150 KIAA12 DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|710 DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW 40 50 60 70 80 90 160 170 180 190 200 210 KIAA12 CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|710 CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ 100 110 120 130 140 150 220 230 240 250 260 270 KIAA12 PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|710 PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI 160 170 180 190 200 210 280 290 300 310 320 330 KIAA12 AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|710 AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL 220 230 240 250 260 270 340 350 360 370 380 390 KIAA12 VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|710 VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE 280 290 300 310 320 330 400 410 420 KIAA12 QYAAPLPPAVFLGLARKIYKRRK ::::::::::::::::::::::: gi|710 QYAAPLPPAVFLGLARKIYKRRK 340 350 420 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Wed Mar 4 08:36:22 2009 done: Wed Mar 4 08:41:14 2009 Total Scan time: 1508.780 Total Display time: 0.140 Function used was FASTA [version 34.26.5 April 26, 2007]