# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh18869.fasta.huge -Q ../query/KIAA1291.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1291, 1254 aa vs ./tmplib.24314 library 1986251 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.3411+/-0.00534; mu= 22.1662+/- 0.365 mean_var=95.7473+/-22.332, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.131072 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0724 ( 1047 res) hk02773 (1047) 148 39.2 0.0041 >>KIAA0724 ( 1047 res) hk02773 (1047 aa) initn: 140 init1: 57 opt: 148 Z-score: 147.7 bits: 39.2 E(): 0.0041 Smith-Waterman score: 209; 20.632% identity (48.048% similar) in 1076 aa overlap (8-998:49-1046) 10 20 30 KIAA12 ARVAANAPPPASHPRRPPRPGTN--GWSRRGSCRASW :: .:: : : . ::.:: . :: KIAA07 STNFGLWQASHPQTRWGGLGSHARPGPPLTPPLPGHPSRGLAGGQQPRGWGRR-QIRAHL 20 30 40 50 60 70 40 50 60 70 80 KIAA12 -SRDCSGVRSRRVALGMA----MDQVNALCEQLVKAV-TVMMDPNSTQRYRLEALKFCEE .:. . .. :. : : .. :.. ::. ...::: .. : :. . KIAA07 PAREGAKMERREEQPGAAGAGAAPALDFTVENVEKALHQLYYDPNIENKN--LAQKWLMQ 80 90 100 110 120 130 90 100 110 120 130 140 KIAA12 FKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELI- . : . .: . .: ...:: . :. .. :. . . :: ... : KIAA07 -AQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQIT 140 150 160 170 180 190 150 160 170 180 190 200 KIAA12 --ANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDM--LIELDTLSKQGETQTELVM :.:. .: ... ::. ... :. :: :: :.. . .:. . .. KIAA07 RFASGSKIVL---TRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALL 200 210 220 230 240 250 210 220 230 240 250 260 KIAA12 FILLRLAEDVVTFQT--LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTS .: : :. ::: :: :. .. .:. . .: .: . ::. KIAA07 ELLTVLPEE---FQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQ------------- 260 270 280 290 270 280 290 300 310 320 KIAA12 QESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCK-LLEILCLLLNEQELQLGAAECL .. .: . ..: . .::.. .. ..:. :.. :...:: ...: . KIAA07 ---PSSPSC----VRQKVLKCFSSWVQL-EVPLQDCEALIQAAFAALQDSELFDSSVEAI 300 310 320 330 340 330 340 350 360 370 380 KIAA12 LIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALG- . :.:. . . :. :. ... . :....: . .: . :.. ::: KIAA07 VNAISQPDAQRYVNTLLKLI-PLVLGLQEQLRQAVQNGDMETSHGI-----CRIAVALGE 350 360 370 380 390 400 390 400 410 420 430 KIAA12 NQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQF----LRSSTQMTWGALFRHEILSR :. ::: ..:: ..: .. .. : :... :: .:. .. .::: KIAA07 NHSRALL---DQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSF 410 420 430 440 450 440 450 460 470 480 490 KIAA12 DPLLLAIIPKYLRASMTNLVKMGFPSKTDSPS-CEYSRFDFDSDEDFNAF---FNSSRAQ . :. . : . .:: . . :.. :: ::. .. : :.: . .... KIAA07 EAEKQAVYQQVYRPVYFQLVDV-LLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMY 460 470 480 490 500 510 500 510 520 530 540 KIAA12 QGEVM--RLACRLDPK-----TSFQMAGEW-----LKYQLSTFLDAGSVNSCSAVGTGEG :.. .: : : :: . : : : .... .. .:: : : : KIAA07 VYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-SDVVPGLI 520 530 540 550 560 570 550 560 570 580 KIAA12 SLCSVFSPSFVQ--------------WEA-MTLFLESVITQMFRTLNREEIPVNDGIELL .: .: : :: : : ....::. ....:. :. :.. . : KIAA07 GLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSVSS-VSTL 580 590 600 610 620 630 590 600 610 620 630 640 KIAA12 QMVLNFDTKD--PLILSCVLTNVSALFPFV--TYRPEFLPQVFSKLFSSVTFETVEESKA . . : : . : .. ..:. . : . .: :... :.:.. : . KIAA07 KKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI----- 640 650 660 670 680 690 650 660 670 680 690 KIAA12 PRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSN---ELLLTQMEKCAL ..:.. : .. . .. :. . :. :::: : ... : KIAA07 -----LKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHE 700 710 720 730 740 700 710 720 730 740 750 KIAA12 MEALV-LISNQFKN---YERQKVFLEELMAPVASIWLSQDMHRVLSDVDAFIVYVGTDQK : : : : :.:: .:. : : ::. : . : . : : : KIAA07 GPELRKLPVPQGPNPVVVVLQQVF--QLIQKVLSKWLN-DAQVVEAVCAIFEKSVKTLLD 750 760 770 780 790 800 760 770 780 790 800 KIAA12 SCDPGLEDPCG-LNRARMSFCVYSILGVVKRTCW-----PTDLEEAKAGGFVVGYTSSGN . : . . : :.: .. : : .... :. . .: ..: :: KIAA07 DFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLV--TSVTL 810 820 830 840 850 860 810 820 830 840 850 860 KIAA12 PIFRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQ .:.. .. ..:... :. .. :... . . ::. . . :.:.: KIAA07 TLFQQGPRDHP-DIVDSFMQLL-AQALKRKPDLF------LCERLDVKAVFQCAVLALKF 870 880 890 900 910 870 880 890 900 910 920 KIAA12 PLLELNDSPVFKTVLERMQRFFSTLYENCFHILGKAGPSMQQD--------FYTVEDLAT : ..:. :. ::. : : .. . .: .:.: . .. :. KIAA07 P-----EAPTVKASCG----FFTELLPRCGEVES-VGKVVQEDGRMLLIAVLEAIGGQAS 920 930 940 950 960 930 940 950 960 970 KIAA12 QLLSSAFVNLNNIPDYRLRPMLRVFVKPLVLFCPPEHYEALVSPILGPLFTY--LHMRLS . : . :... . . .: ...: . :: : .:: :. :. :.. KIAA07 RSLMDCFADILFALNKHCFSLLSMWIKEALQ--PPGFPSARLSPEQKDTFSQQILRERVN 970 980 990 1000 1010 1020 980 990 1000 1010 1020 1030 KIAA12 QKW--QVINQRSLLC----GEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKG .. ..... .::: : : .:: KIAA07 KRRVKEMVKEFTLLCRGLHGTDYTADY 1030 1040 1254 residues in 1 query sequences 1986251 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:16:26 2008 done: Thu Dec 18 15:16:27 2008 Total Scan time: 0.730 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]