hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22421292/chunk_1/iprscan-20080501-22421292.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1290 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00676.10.ls Dehydrogenase E1 component 412.6 5e-121 1 PF00676.10.fs Dehydrogenase E1 component 410.6 2.1e-120 1 PF02779.14.fs Transketolase, pyrimidine binding domain 249.2 6.1e-73 1 PF02779.14.ls Transketolase, pyrimidine binding domain 251.2 2e-72 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00676.10.fs 1/1 244 570 .. 1 327 [] 410.6 2.1e-120 PF00676.10.ls 1/1 244 570 .. 1 327 [] 412.6 5e-121 PF02779.14.fs 1/1 637 853 .. 1 189 [] 249.2 6.1e-73 PF02779.14.ls 1/1 637 853 .. 1 189 [] 251.2 2e-72 Alignments of top-scoring domains: PF00676.10.fs: domain 1 of 1, from 244 to 570: score 410.6, E = 2.1e-120 *->yrmmllrRmedarmalykrkgirGFyhlyaGqEAlqvGiaaAldkgv +r++++ R+ed++++++++++++G++++++ ++Al+++i+++++ g+ KIAA1290 244 ARLVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSEMGI 290 DyviptmPYRdhgvllarGvsk.leevlaelyGreaGcskGkGGSmhmpg + vi +mP+R++ ++la++++k+le+++++++ + +++++G+G++++++g KIAA1290 291 ENVILGMPHRGRLNVLANVIRKdLEQIFCQFDPKLEAADEGSGDVKYHLG 340 yygpknnrfyggngivgaqaqvpipaAvGiAlAakekreQfyvgdyrgkk +y+ ++nr++ +n++++++a++++ +Av++++++k+k+eQfy gd gkk KIAA1290 341 MYHERINRVTNRNITLSLVANPSHLEAVDPVVQGKTKAEQFYRGDAQGKK 390 evaitlfGDGAFtnqGqffEalNfAalwklPvgGaIFvceNNqyAisTpa +++i+ +GD+AF++qG ++E++++++l+++++ G+++v++NNq++++T++ KIAA1290 391 VMSILVHGDAAFAGQGVVYETFHLSDLPSYTTNGTVHVVVNNQIGFTTDP 440 erssasteyadrArGygIPgirVDGmDplAVyqAvKeAaerAreGkGPtL +++++s++++d+Ar++++P+++V+++Dp+AV +++ +Aae++++++++++ KIAA1290 441 RMARSSPYPTDVARVVNAPIFHVNADDPEAVIYVCSVAAEWRNTFNKDVV 490 IElvTYRygGHsmsDdpstYRtreeveevrkkkDPikrlkkhLvskGlvs ++lv+YR++GH+++D+p++++ + +++++ + +++k+++++L+ +G v+ KIAA1290 491 VDLVCYRRRGHNEMDEPMFTQ-PLMYKQIHRQVPVLKKYADKLIAEGTVT 539 eeElkeiekevrkeieeAvkkAesapepnpe<-* E +e++++++ ++eeA+ +++++++++++ KIAA1290 540 LQEFEEEIAKYDRICEEAYGRSKDKKILHIK 570 PF00676.10.ls: domain 1 of 1, from 244 to 570: score 412.6, E = 5e-121 *->yrmmllrRmedarmalykrkgirGFyhlyaGqEAlqvGiaaAldkgv +r++++ R+ed++++++++++++G++++++ ++Al+++i+++++ g+ KIAA1290 244 ARLVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSEMGI 290 DyviptmPYRdhgvllarGvsk.leevlaelyGreaGcskGkGGSmhmpg + vi +mP+R++ ++la++++k+le+++++++ + +++++G+G++++++g KIAA1290 291 ENVILGMPHRGRLNVLANVIRKdLEQIFCQFDPKLEAADEGSGDVKYHLG 340 yygpknnrfyggngivgaqaqvpipaAvGiAlAakekreQfyvgdyrgkk +y+ ++nr++ +n++++++a++++ +Av++++++k+k+eQfy gd gkk KIAA1290 341 MYHERINRVTNRNITLSLVANPSHLEAVDPVVQGKTKAEQFYRGDAQGKK 390 evaitlfGDGAFtnqGqffEalNfAalwklPvgGaIFvceNNqyAisTpa +++i+ +GD+AF++qG ++E++++++l+++++ G+++v++NNq++++T++ KIAA1290 391 VMSILVHGDAAFAGQGVVYETFHLSDLPSYTTNGTVHVVVNNQIGFTTDP 440 erssasteyadrArGygIPgirVDGmDplAVyqAvKeAaerAreGkGPtL +++++s++++d+Ar++++P+++V+++Dp+AV +++ +Aae++++++++++ KIAA1290 441 RMARSSPYPTDVARVVNAPIFHVNADDPEAVIYVCSVAAEWRNTFNKDVV 490 IElvTYRygGHsmsDdpstYRtreeveevrkkkDPikrlkkhLvskGlvs ++lv+YR++GH+++D+p++++ + +++++ + +++k+++++L+ +G v+ KIAA1290 491 VDLVCYRRRGHNEMDEPMFTQ-PLMYKQIHRQVPVLKKYADKLIAEGTVT 539 eeElkeiekevrkeieeAvkkAesapepnpe<-* E +e++++++ ++eeA+ +++++++++++ KIAA1290 540 LQEFEEEIAKYDRICEEAYGRSKDKKILHIK 570 PF02779.14.fs: domain 1 of 1, from 637 to 853: score 249.2, E = 6.1e-73 *->kkiatrkAsgeALaelaeedprvvgggaDvgaygGtftvtkgllhpq ++++++ A+ +A+++l++e+ +v+++g+Dv+ +Gtf++++++lh+q KIAA1290 637 RTVDWALAEYMAFGSLLKEGIHVRLSGQDVE--RGTFSHRHHVLHDQ 681 g.................egRvidtgiaEqamvgianGmAlhGpnllppv + ++++ + ++ +++ ++ v+++ ++E++++g++ G+A++ pn+l+ + KIAA1290 682 EvdrrtcvpmnhlwpdqaPYTVCNSSLSEYGVLGFELGYAMASPNALVLW 731 eatFgdFanpAfdQiyadaairryaalgklpvpfvvtrdpiGvGedGPtH ea+FgdF n ++Q+++d++i+ + a++ + + +v ++p+G ++ GP+H KIAA1290 732 EAQFGDFHN--TAQCIIDQFISTGQAKWVRHNG-IVLLLPHGMEGMGPEH 778 qsqedeaylraiPg.................e.nNlkVvrPsdpaetkgl +s+++e++l++ + +++ + +++ + ++ +++N+ Vv++s+pa++++ KIAA1290 779 SSARPERFLQMSNDdsdaypaftkdfevsqlYdCNWIVVNCSTPANYFHV 828 LraAirsdrddrdPvvlrlprqllrhk<-* Lr++i +++r+P+++++p++llrh+ KIAA1290 829 LRRQIL--LPFRKPLIIFTPKSLLRHP 853 PF02779.14.ls: domain 1 of 1, from 637 to 853: score 251.2, E = 2e-72 *->kkiatrkAsgeALaelaeedprvvgggaDvgaygGtftvtkgllhpq ++++++ A+ +A+++l++e+ +v+++g+Dv+ +Gtf++++++lh+q KIAA1290 637 RTVDWALAEYMAFGSLLKEGIHVRLSGQDVE--RGTFSHRHHVLHDQ 681 g.................egRvidtgiaEqamvgianGmAlhGpnllppv + ++++ + ++ +++ ++ v+++ ++E++++g++ G+A++ pn+l+ + KIAA1290 682 EvdrrtcvpmnhlwpdqaPYTVCNSSLSEYGVLGFELGYAMASPNALVLW 731 eatFgdFanpAfdQiyadaairryaalgklpvpfvvtrdpiGvGedGPtH ea+FgdF n ++Q+++d++i+ + a++ + + +v ++p+G ++ GP+H KIAA1290 732 EAQFGDFHN--TAQCIIDQFISTGQAKWVRHNG-IVLLLPHGMEGMGPEH 778 qsqedeaylraiPg.................e.nNlkVvrPsdpaetkgl +s+++e++l++ + +++ + +++ + ++ +++N+ Vv++s+pa++++ KIAA1290 779 SSARPERFLQMSNDdsdaypaftkdfevsqlYdCNWIVVNCSTPANYFHV 828 LraAirsdrddrdPvvlrlprqllrhk<-* Lr++i +++r+P+++++p++llrh+ KIAA1290 829 LRRQIL--LPFRKPLIIFTPKSLLRHP 853 //