hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22395396/chunk_1/iprscan-20080501-22395396.nocrc
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Query sequence: KIAA1289
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00212                                                 101.0    1.3e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00212    1/1    2512  2676 ..     1   144 []   101.0  1.3e-25

Alignments of top-scoring domains:
SM00212: domain 1 of 1, from 2512 to 2676: score 101.0, E = 1.3e-25
                   *->kRlqkElkelqkdpppgisaipvd.....nlleWtvtIvGPpdTpYE
                      +Rl++E  +l  + p + s+ ++ + ++++l   +v+I+GP+dTpY+
    KIAA1289  2512    RRLAQEAVTLSTSLPLSSSSSVFVrcdeeRLDIMKVLITGPADTPYA 2558 

                   gGvfkltieFPedYPfkPPkvkFitk.....iyHPNvdsssGeiCLdILk
                   +G f+++++FP+dYP +PP v   t ++++  ++PN + ++G++CL+IL+
    KIAA1289  2559 NGCFEFDVYFPQDYPSSPPLVNLETTgghsvRFNPNLY-NDGKVCLSILN 2607 

                   .......ekWsPa.ltletvLlsiqsLLnePnpdsPlnvdaaelyrk...
                   + +++++ekW+P + + ++vL s+qsL    +p      +   + +++++
    KIAA1289  2608 twhgrpeEKWNPQtSSFLQVLVSVQSLILVAEPYF---NEPGYERSRgtp 2654 

                   ....dreefkkkvrewtkkyae<-*
                   ++++ + e+  ++r  t k+a+   
    KIAA1289  2655 sgtqSSREYDGNIRQATVKWAM    2676 

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