# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh15326s2.fasta.huge -Q ../query/KIAA1289.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1289, 2793 aa
 vs ./tmplib.24314 library

1984712 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.6606+/-0.00527; mu= 23.3582+/- 0.360
 mean_var=102.2697+/-24.162, 0's: 0 Z-trim: 1  B-trim: 0 in 0/40
 Lambda= 0.126824

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 45, opt: 33, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1734  ( 1313 res)   ph00331                    (1313)  504 104.5 2.7e-22


>>KIAA1734  ( 1313 res)   ph00331                         (1313 aa)
 initn: 465 init1: 165 opt: 504  Z-score: 492.2  bits: 104.5 E(): 2.7e-22
Smith-Waterman score: 506;  32.024% identity (61.027% similar) in 331 aa overlap (2392-2710:851-1167)

            2370      2380      2390      2400      2410           
KIAA12 QSECQTSVGTLLAKMKTCVDTYTNRLRSKRENVKTGVKPDASDQEPEGLTL---LVPDIQ
                                     :.. :: .: .   :::  :    .. ::.
KIAA17 EKAGKDGPPKSFRELKEAIKILESLKNMTVEQLLTG-SPTSPTVEPEKPTREKKFLDDIK
              830       840       850        860       870         

     2420      2430        2440      2450      2460      2470      
KIAA12 KTAEIVYAATTSLRQANQEK--KLGEYSKKAAMKPKPLSVLKSLEEKYVAVMKKLQFD--
       :  : .  .  ..  ...::   . .  .:   ::.  : .:.   . . :. . :    
KIAA17 KLQENLKKTLDNVAIVEEEKMEAVPDVERKED-KPEGQSPVKAEWPSETPVLCQ-QCGGK
     880       890       900       910        920       930        

            2480      2490      2500       2510      2520      2530
KIAA12 ---TFEMVSEDEDGKLGFKVNYHYMSQVK-NANDANSAARARRLAQEAVTLSTSLPLSSS
          ::  .. .  . : :  . : ..... .  .:..   . :  .: . :.::::    
KIAA17 PGVTFTSAKGEVFSVLEFAPSNHSFKKIEFQPPEAKKFFSTVR--KEMALLATSLP----
       940       950       960       970       980         990     

             2540      2550      2560      2570       2580         
KIAA12 SSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPP-LVNLETTGGHSV
        ...:.  :.:.:....:: ::. ::: .: . ::. .:. ::. :: .  :   .:   
KIAA17 EGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSG---
            1000      1010      1020      1030      1040           

    2590      2600      2610      2620      2630      2640         
KIAA12 RFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYER
       :.:::::..::::.:.:.:: :.  :.:. . ::.::::.:.:.:::: :::.:: :.. 
KIAA17 RLNPNLYDNGKVCVSLLGTWIGKGTERWTSK-SSLLQVLISIQGLILVNEPYYNEAGFDS
     1050      1060      1070       1080      1090      1100       

    2650      2660      2670      2680      2690      2700         
KIAA12 SRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEW
       .::   : ..:: :. ..    :  .: . .: :   :.. :..::     ... . : :
KIAA17 DRGLQEGYENSRCYN-EMALIRVVQSMTQLVRRPPEVFEQEIRQHFSTGGWRLVNRIESW
      1110      1120       1130      1140      1150      1160      

    2710      2720      2730      2740      2750      2760         
KIAA12 IADIQQYSSDKRVGRTMSHHAAALKRHTAQLREELLKLPCPEGLDPDTDDAPEVCRATTG
       .                                                           
KIAA17 LETHALLEKAQALPNGVPKASSSPEPPAVAELSDSGQQEPEDGGPAPGEASQGSDSEGGA
       1170      1180      1190      1200      1210      1220      




2793 residues in 1 query   sequences
1984712 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:16:20 2008 done: Thu Dec 18 15:16:22 2008
 Total Scan time:  1.300 Total Display time:  0.080

Function used was FASTA [version 34.26.5 April 26, 2007]