hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22344513/chunk_1/iprscan-20080501-22344513.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1286 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00297 149.8 2.9e-40 1 SM00293 145.7 5e-39 1 SM00249 66.0 4.7e-15 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00249 1/2 223 269 .. 1 39 [] 31.4 0.00013 SM00249 2/2 333 396 .. 1 39 [] 34.7 1.3e-05 SM00297 1/1 596 704 .. 1 118 [] 149.8 2.9e-40 SM00293 1/1 1083 1166 .. 1 84 [] 145.7 5e-39 Alignments of top-scoring domains: SM00249: domain 1 of 2, from 223 to 269: score 31.4, E = 0.00013 *->yC.vCgk......g.llqCdkgCdrwyHv.Clgppleepdg.wyCpr +C vC +++ ++++ +l+Cd C+ ++H++C+g p p+g+w+C KIAA1286 223 FCcVCLDdechnsNvILFCD-ICNLAVHQeCYGVPYI-PEGqWLCRC 267 Ck<-* C+ KIAA1286 268 CL 269 SM00249: domain 2 of 2, from 333 to 396: score 34.7, E = 1.3e-05 *->yC.vCgk...g.llqCd.kgCdrwyHv.Clgpple............ +C +C++++ g +qC++ +C +++Hv+C++ +++ + ++ ++++ KIAA1286 333 TCyICKQkglGaAIQCHkVNCYTAFHVtCAQRAGLfmkiepmretsl 379 .....epdg.wyCprCk<-* +++ ++++ yC+ ++ KIAA1286 380 ngtifTVRKtAYCEAHS 396 SM00297: domain 1 of 1, from 596 to 704: score 149.8, E = 2.9e-40 *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv ++ ++++++ ll++ l++l+++ ++a +F+epv+ +e v KIAA1286 596 MELeLMPFNVLLRTTLDLLQEK--------DPAHIFAEPVNLSE--V 632 PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds PDY + I kPMD++t+++kle++ Y++leeF++DfnL+++N+++YN +d+ KIAA1286 633 PDYLEFISKPMDFSTMRRKLESHLYRTLEEFEEDFNLIVTNCMKYNAKDT 682 evykdAkkLeklfeeklkelpp<-* +++++A++L++l + l+++++ KIAA1286 683 IFHRAAVRLRDLGGAILRHARR 704 SM00293: domain 1 of 1, from 1083 to 1166: score 145.7, E = 5e-39 *->fkpGDlVwAKmkGFPwWPAlvvspketpsnirktgvviphpplevlk +kp++lVwAK++G+P++PAl+++pk++++ ++++gv+ip+ppl+vlk KIAA1286 1083 LKPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLK 1129 leeeaknkrkenlypVlFFgdkdtrawvsssklfPLt<-* l+e+++ ++ e+l+ VlFF++k+t++w++++k+ PL+ KIAA1286 1130 LGEQKQAEAGEKLFLVLFFDNKRTWQWLPRDKVLPLG 1166 //