hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22330863/chunk_1/iprscan-20080501-22330863.nocrc
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Query sequence: KIAA1285
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 170.2    2.1e-46   6
SM00349                                                 106.0    4.5e-27   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00349      1/1     310   370 ..     1    62 []   106.0  4.5e-27
SM00355      1/6     571   593 ..     1    23 []    26.6   0.0034
SM00355      2/6     599   621 ..     1    23 []    25.0    0.011
SM00355      3/6     661   683 ..     1    23 []    30.2  0.00029
SM00355      4/6     689   711 ..     1    23 []    28.0   0.0013
SM00355      5/6     719   741 ..     1    23 []    31.9  8.9e-05
SM00355      6/6     747   769 ..     1    23 []    28.5   0.0009

Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 310 to 370: score 106.0, E = 4.5e-27
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      VtF+DVAV Fs++EW+ L  +Q++LY++VM+ NY+ LvS++ +++sk
    KIAA1285   310    VTFDDVAVHFSEQEWGNLSEWQKELYKNVMRGNYESLVSMD-YAISK 355  

                   pdliskLEqgeEpwi<-*
                   pdl+s++E+ge p +   
    KIAA1285   356 PDLMSQMERGERPTM    370  

SM00355: domain 1 of 6, from 571 to 593: score 26.6, E = 0.0034
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + Cgksf+ k +L+ H+r H   
    KIAA1285   571    FTCME-CGKSFRLKiNLIIHQRNH    593  

SM00355: domain 2 of 6, from 599 to 621: score 25.0, E = 0.011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + C  sf++k++L+ H+r+H   
    KIAA1285   599    YECAE-CEISFRHKqQLTLHQRIH    621  

SM00355: domain 3 of 6, from 661 to 683: score 30.2, E = 0.00029
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykCp+ C+ sfs+k++L++H+ +H   
    KIAA1285   661    YKCPE-CDSSFSHKsSLTKHQITH    683  

SM00355: domain 4 of 6, from 689 to 711: score 28.0, E = 0.0013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+Cp+ C+ksf+ + +L+ H+rvH   
    KIAA1285   689    YTCPE-CKKSFRLHiSLVIHQRVH    711  

SM00355: domain 5 of 6, from 719 to 741: score 31.9, E = 8.9e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgksfs++++L rH+r+H   
    KIAA1285   719    FICSL-CGKSFSRPsHLLRHQRTH    741  

SM00355: domain 6 of 6, from 747 to 769: score 28.5, E = 0.0009
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kCp+ C ksfs k+ L++H rvH   
    KIAA1285   747    FKCPE-CEKSFSEKsKLTNHCRVH    769  

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