hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22330863/chunk_1/iprscan-20080501-22330863.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1285
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         193.6    4.3e-55   6
PF00096.16.fs Zinc finger, C2H2 type                         181.8    1.5e-51   6
PF01352.17.fs KRAB box                                        77.2    2.9e-21   1
PF01352.17.ls KRAB box                                        79.2    1.2e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01352.17.fs   1/1     310   350 ..     1    41 []    77.2  2.9e-21
PF01352.17.ls   1/1     310   350 ..     1    41 []    79.2  1.2e-20
PF00096.16.ls   1/6     571   593 ..     1    24 []    30.0  7.7e-06
PF00096.16.fs   1/6     571   593 ..     1    24 []    28.0  9.7e-06
PF00096.16.ls   2/6     599   621 ..     1    24 []    28.9  1.6e-05
PF00096.16.fs   2/6     599   621 ..     1    24 []    27.0  1.8e-05
PF00096.16.ls   3/6     661   683 ..     1    24 []    34.9  2.6e-07
PF00096.16.fs   3/6     661   683 ..     1    24 []    32.9  5.8e-07
PF00096.16.ls   4/6     689   711 ..     1    24 []    29.3  1.2e-05
PF00096.16.fs   4/6     689   711 ..     1    24 []    27.4  1.4e-05
PF00096.16.fs   5/6     719   741 ..     1    24 []    37.7  3.8e-08
PF00096.16.ls   5/6     719   741 ..     1    24 []    39.6  9.8e-09
PF00096.16.fs   6/6     747   769 ..     1    24 []    28.8  6.2e-06
PF00096.16.ls   6/6     747   769 ..     1    24 []    30.8  4.4e-06

Alignments of top-scoring domains:
PF01352.17.fs: domain 1 of 1, from 310 to 350: score 77.2, E = 2.9e-21
                   *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-*
                      VtF DVaV+F+++EW+ L+++Q++LY++VM+ Ny+ LvS++   
    KIAA1285   310    VTFDDVAVHFSEQEWGNLSEWQKELYKNVMRGNYESLVSMD    350  

PF01352.17.ls: domain 1 of 1, from 310 to 350: score 79.2, E = 1.2e-20
                   *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-*
                      VtF DVaV+F+++EW+ L+++Q++LY++VM+ Ny+ LvS++   
    KIAA1285   310    VTFDDVAVHFSEQEWGNLSEWQKELYKNVMRGNYESLVSMD    350  

PF00096.16.ls: domain 1 of 6, from 571 to 593: score 30.0, E = 7.7e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  +CgksF+ k nL  H+r H   
    KIAA1285   571    FTCM-ECGKSFRLKINLIIHQRNH    593  

PF00096.16.fs: domain 1 of 6, from 571 to 593: score 28.0, E = 9.7e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  +CgksF+ k nL  H+r H   
    KIAA1285   571    FTCM-ECGKSFRLKINLIIHQRNH    593  

PF00096.16.ls: domain 2 of 6, from 599 to 621: score 28.9, E = 1.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +C  sF++k +L+ H+r+H   
    KIAA1285   599    YECA-ECEISFRHKQQLTLHQRIH    621  

PF00096.16.fs: domain 2 of 6, from 599 to 621: score 27.0, E = 1.8e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +C  sF++k +L+ H+r+H   
    KIAA1285   599    YECA-ECEISFRHKQQLTLHQRIH    621  

PF00096.16.ls: domain 3 of 6, from 661 to 683: score 34.9, E = 2.6e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykCp +C+ sFs+ks+L++H+ tH   
    KIAA1285   661    YKCP-ECDSSFSHKSSLTKHQITH    683  

PF00096.16.fs: domain 3 of 6, from 661 to 683: score 32.9, E = 5.8e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykCp +C+ sFs+ks+L++H+ tH   
    KIAA1285   661    YKCP-ECDSSFSHKSSLTKHQITH    683  

PF00096.16.ls: domain 4 of 6, from 689 to 711: score 29.3, E = 1.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+Cp +C+ksF+ + +L  H+r+H   
    KIAA1285   689    YTCP-ECKKSFRLHISLVIHQRVH    711  

PF00096.16.fs: domain 4 of 6, from 689 to 711: score 27.4, E = 1.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+Cp +C+ksF+ + +L  H+r+H   
    KIAA1285   689    YTCP-ECKKSFRLHISLVIHQRVH    711  

PF00096.16.fs: domain 5 of 6, from 719 to 741: score 37.7, E = 3.8e-08
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+  CgksFsr+s+L rH+rtH   
    KIAA1285   719    FICS-LCGKSFSRPSHLLRHQRTH    741  

PF00096.16.ls: domain 5 of 6, from 719 to 741: score 39.6, E = 9.8e-09
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+  CgksFsr+s+L rH+rtH   
    KIAA1285   719    FICS-LCGKSFSRPSHLLRHQRTH    741  

PF00096.16.fs: domain 6 of 6, from 747 to 769: score 28.8, E = 6.2e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kCp +C ksFs ks L++H r+H   
    KIAA1285   747    FKCP-ECEKSFSEKSKLTNHCRVH    769  

PF00096.16.ls: domain 6 of 6, from 747 to 769: score 30.8, E = 4.4e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kCp +C ksFs ks L++H r+H   
    KIAA1285   747    FKCP-ECEKSFSEKSKLTNHCRVH    769  

//