# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh04440bmrp1.fasta.huge -Q ../query/KIAA1282.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
KIAA1282, 1117 aa
vs ./tmplib.24314 library
1986388 residues in 2037 sequences
Expectation_n fit: rho(ln(x))= 10.5155+/-0.0102; mu= -7.7610+/- 0.687
mean_var=447.0756+/-107.367, 0's: 0 Z-trim: 4 B-trim: 0 in 0/40
Lambda= 0.060657
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 39, opt: 27, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2037)
KIAA1535 ( 711 res) fk12792 ( 711) 320 43.1 0.00018
>>KIAA1535 ( 711 res) fk12792 (711 aa)
initn: 369 init1: 194 opt: 320 Z-score: 172.4 bits: 43.1 E(): 0.00018
Smith-Waterman score: 492; 25.130% identity (49.870% similar) in 768 aa overlap (229-902:1-704)
200 210 220 230 240 250
KIAA12 ANRRRSRAVLYHLSGHLQKQPKGKHKLNKGVFGEKPNLPEYKVAAIRKSPFILLH-CGAL
::: . . : . .... ..: . .
KIAA15 VFGSHKAV-EIEQERVKSAGAWIIHPYSDF
10 20
260 270 280 290 300 310
KIAA12 RATWDGFILLATLYVAVTVPYSVCVSTAREPSAARGPP-SVCDLAVEVLFILDIVLNFRT
: :: ..:: :.:. . : .. .: .. :: : .. ...:.::.::::::
KIAA15 RFYWDLIMLL--LMVGNLIVLPVGITFFKEENS---PPWIVFNVLSDTFFLLDLVLNFRT
30 40 50 60 70 80
320 330 340 350 360
KIAA12 TFVSKSG-QVVFAPKSICLHYVTTWFLLDVIAALPFDLLHA-------FKVNVYFGAHLL
.: . : ....::..: .:. ::::.:.:...: : . . ..:: :. :
KIAA15 GIVVEEGAEILLAPRAIRTRYLRTWFLVDLISSIPVDYIFLVVELEPRLDAEVYKTARAL
90 100 110 120 130 140
370 380 390 400
KIAA12 KTVR------LLRLLRLLPRLDRY-SQY-----------SAVVLTL-LMAVFALLAHWVA
. :: ::::::: :: :: :. :::: . :.... :: :: .
KIAA15 RIVRFTKILSLLRLLRL-SRLIRYIHQWEEIFHMTYDLASAVVRIFNLIGMMLLLCHWDG
150 160 170 180 190 200
410 420 430 440 450 460
KIAA12 CVWFYIGQREIESSESELPEIGWLQELARRLETPYYLVGRRPAGGNSSGQSDNCSSSSEA
:. : . . . ..: :. . ..:. .: :..
KIAA15 CLQFLVPMLQ------DFPPDCWV--------SINHMVN------HSWGRQ---------
210 220 230
470 480 490 500 510 520
KIAA12 NGTGLELLGGPSLRSAYITSLYFALSSLTSVGFGNVSANTDTEKIFSICTMLIGALMHAV
: .:. :.: . .:.:. . . ... .:..:: .:.
KIAA15 ----------------YSHALFKAMSHMLCIGYGQQAPVGMPDVWLTMLSMIVGATCYAM
240 250 260 270
530 540 550 560 570 580
KIAA12 VFGNVTAIIQRMYARRFLYHSRTRDLRDYIRIHRIPKPLKQRMLEYFQATWAVNNGIDTT
.:..::.:: . . : :. . .....:. .:..: .::. ::.. . .. .:
KIAA15 FIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADTRQRIHEYYEHRYQ-GKMFDEE
280 290 300 310 320 330
590 600 610 620 630 640
KIAA12 ELLQSLPDELRADIAMHLHKE-VLQLPLFEAASRGCLRALSLALRPAFCTPGEYLIHQGD
.: : . :: .: . : ..::: :. . . :. :: ::. ....:.
KIAA15 SILGELSEPLREEIINFTCRGLVAHMPLFAHADPSFVTAVLTKLRFEVFQPGDLVVREGS
340 350 360 370 380 390
650 660 670 680 690 700
KIAA12 ALQALYFVCSGSMEVLKGGTVLAILGKGDLIG--CELPRREQVVKANADVKGLTYCVLQC
. . .::. : . :: :. . : :. .: : : : ...... :: ::: :
KIAA15 VGRKMYFIQHGLLSVLARGARDTRLTDGSYFGEICLLTRGRRTASVRAD----TYCRLYS
400 410 420 430 440 450
710 720 730 740
KIAA12 LQLAGLHDSLALYPEFAPRF-----SRGLR-GELSYNL---------GAGGG--------
:.. .. : .: . : .: :: :. . : :..::
KIAA15 LSVDHFNAVLEEFPMMRRAFETVAMDRLLRIGKKNSILQRKRSEPSPGSSGGIMEQHLVQ
460 470 480 490 500 510
750 760 770
KIAA12 -----------SAEVDTSSLSGDNTLMSTLEEKETDG-------------EQGPTVSPAP
: ..::: .: : . .. ..:: :
KIAA15 HDRDMARGVRGRAPSTGAQLSGKPVLWEPLVHAPLQAAAVTSNVAIALTHQRGPL--PLS
520 530 540 550 560 570
780 790 800 810 820 830
KIAA12 ADEPSSPLLSPGCTSSSSAAKLLSPRRTAP---RPRLGGRGRPGRA-GALKAEAGPS---
: :.. : . :..: :. : : :..: :: . :.:. : ..:: :
KIAA15 PDSPATLLARSAWRSAGSPASPLVPVRAGPWASTSRLPA--PPARTLHASLSRAGRSQVS
580 590 600 610 620
840 850 860 870 880
KIAA12 --APPRALEGLRLPPM--PWNVPPDLSPRVVDGIEDGCGSDQPKFSFRVGQSG----PEC
.:: . : :: : : .. :. . : :: . . : :. :: :
KIAA15 LLGPPPGGGGRRLGPRGRPLSASQPSLPQRATG--DGSPGRKGTGSERLPPSGLLAKPPR
630 640 650 660 670 680
890 900 910 920 930 940
KIAA12 SSSPSPGPESGLLTVPHGPSEARNTDTLDKLRQAVTELSEQVLQMREGLQSLRQAVQLVL
...: : : ..:.:
KIAA15 TAQP-PRPPVPEPATPRGLQLSANM
690 700 710
1117 residues in 1 query sequences
1986388 residues in 2037 library sequences
Scomplib [34.26]
start: Thu Dec 18 15:16:04 2008 done: Thu Dec 18 15:16:04 2008
Total Scan time: 0.700 Total Display time: 0.040
Function used was FASTA [version 34.26.5 April 26, 2007]