hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22213310/chunk_1/iprscan-20080501-22213310.nocrc
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Query sequence: KIAA1278
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 353.3   1.6e-101   1
SM00219                                                  37.5    1.9e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      21   271 ..     1   280 []    37.5  1.9e-13
SM00220    1/1      21   271 ..     1   231 []   353.3 1.6e-101

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 21 to 271: score 37.5, E = 1.9e-13
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr
                       + ++++GeG FG+VykG+ k + + VA K + +  +++++++ + r
    KIAA1278    21    YHVLEMIGEGSFGRVYKGRRKysaQVVALKFIPKLGrsekeLRNLQR 67   

                   EakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldy
                   E++iM+ l  +HpNiV +l    ++       + + +v+ y+e G L + 
    KIAA1278    68 EIEIMRGL--RHPNIVHMLDSFETD-------KEVVVVTDYAE-GELFQI 107  

                   LrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvv
                   L + ++ l+ ++   +A Q  +   YL+s+++ HRD    N+L+++++ +
    KIAA1278   108 LEDDGK-LPEDQVQAIAAQLVSALYYLHSHRILHRDMKPQNILLAKGGGI 156  

                   KIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgk
                   K +DFG +R+            + + ++ kg+   l    m+PE   ++ 
    KIAA1278   157 KLCDFGFARAMSTN--------TMVLTSIKGTP--L---YMSPELVEERP 193  

                   FtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlpk
                   + +  D WS G  L+E+   G +P +       s ++++ ++ k   + +
    KIAA1278   194 YDHTADLWSVGCILYELA-VGTPPFYA-----TSIFQLVSLILKDPVRWP 237  

                   PendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..verl<-*
                               ++   +  +     dP +R +  +l  + ++   
    KIAA1278   238 STI---------SPCFKNFLQGLLTKDPRQRLSWPDLlyHPFI    271  

SM00220: domain 1 of 1, from 21 to 271: score 353.3, E = 1.6e-101
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                      Y++l+ +G+G+FG+Vy++r k + ++vA+K i++ ++++++ ++++r
    KIAA1278    21    YHVLEMIGEGSFGRVYKGRRKYSAQVVALKFIPklgrsekelRNLQR 67   

                   EikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrr
                   Ei+i++  +HPNIV+++d+fe+++++ +V++y+eG   +Lf++l++ g+ 
    KIAA1278    68 EIEIMRGlRHPNIVHMLDSFETdKEVVVVTDYAEG---ELFQILEDDGK- 113  

                   glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKl
                        l+E++++ +++Q++saL YLHs++I+HRD KP+NiLL +++ +Kl
    KIAA1278   114 -----LPEdQVQAIAAQLVSALYYLHSHRILHRDMKPQNILLAKggGIKL 158  

                   aDFGlArql.......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcil
                   +DFG+Ar +++++   t++ GTp Ym+PE++++++Y++  +D WS+Gcil
    KIAA1278   159 CDFGFARAMstntmvlTSIKGTPLYMSPELVeerPYDH-TADLWSVGCIL 207  

                   yElltGkpPFp..qldlifkkig..........SpeakdLikklLvkdPe
                   yEl++G pPF+ + ++++  +i++++ +++++ Sp +k+++++lL+kdP+
    KIAA1278   208 YELAVGTPPFYatSIFQLVSLILkdpvrwpstiSPCFKNFLQGLLTKDPR 257  

                   kRlta.eaLedeldikaHPff<-*
                   +Rl+ +++L        HPf+   
    KIAA1278   258 QRLSWpDLLY-------HPFI    271  

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