hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22213310/chunk_1/iprscan-20080501-22213310.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1278 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 355.7 7e-104 1 PF00069.15.fs Protein kinase domain 353.8 2.6e-103 1 PF07714.7.fs Protein tyrosine kinase 86.8 4.3e-25 1 PF07714.7.ls Protein tyrosine kinase 71.9 1.8e-18 1 PF02985.12.ls HEAT repeat 64.5 3.3e-16 5 PF02985.12.fs HEAT repeat 56.8 6.2e-15 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.fs 1/1 21 271 .. 1 287 [] 353.8 2.6e-103 PF07714.7.fs 1/1 21 210 .. 1 209 [. 86.8 4.3e-25 PF07714.7.ls 1/1 21 271 .. 1 272 [] 71.9 1.8e-18 PF00069.15.ls 1/1 21 271 .. 1 287 [] 355.7 7e-104 PF02985.12.ls 2/5 1105 1136 .. 1 36 [] 15.0 0.26 PF02985.12.ls 3/5 1143 1179 .. 1 36 [] 19.0 0.016 PF02985.12.ls 4/5 1183 1219 .. 1 36 [] 17.7 0.039 Alignments of top-scoring domains: PF00069.15.fs: domain 1 of 1, from 21 to 271: score 353.8, E = 2.6e-103 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr y++le +G+GsfG+Vyk+++k + ++VA+K i+k ++++k+++++ r KIAA1278 21 YHVLEMIGEGSFGRVYKGRRKYSAQVVALKFIPKLGRSEKELRNLQR 67 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse Ei+i++ L+HpNIv ++d+fe+++++ +V++y+eg +Lf +l KIAA1278 68 --EIEIMRGLRHPNIVHMLDSFETDKEVVVVTDYAEG-----ELFQILE- 109 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv ++g+l +ed+++ ia Q++++l+YLHs++i+HRD+KP+NILl + g KIAA1278 110 --DDGKL--PEDQVQAIAAQLVSALYYLHSHRILHRDMKPQNILLAKGGG 155 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD + K++DFG+A+ + ++ lt++ GTp Ym+PE++ ++y++ +D KIAA1278 156 I----KLCDFGFARAM-StNTMvLTSIKGTPLYMSPELVE-ERPYDHTAD 199 vWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewdsi WS+G+ilyel+ G pPF+ + +ql+ +il+ p++++s + KIAA1278 200 LWSVGCILYELAVGTPPFYAT-----SIFQLVSLILKDPVRWPSTIS--- 241 srsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* + +k ++ ++L+kDP +Rl+++++l HP++ KIAA1278 242 ------------PCFKNFLQGLLTKDPRQRLSWPDLLYHPFI 271 PF07714.7.fs: domain 1 of 1, from 21 to 210: score 86.8, E = 4.3e-25 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei + ++++GeG+FG+VykG+ k + VA K ++k g se+e KIAA1278 21 YHVLEMIGEGSFGRVYKGRRK----YSAQVVALKFIpKL-GRSEKE- 61 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd ++ + rE++iM+ l +HpNiV +l ++ + +Vt y+eg KIAA1278 62 -LRNLQREIEIMRGL-RHPNIVHMLDSFET-DKE----VVVVTDYAEG-E 103 LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV L L + +++L+ + +a+Q +++ YL+s+++ HRD N+L+ KIAA1278 104 LFQILED---DGKLPEDQVQAIAAQLVSALYYLHSHRILHRDMKPQNILL 150 senlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygkFtsk ++++ +K +DFG aR++ + + ++ k m+PE ++ + + KIAA1278 151 AKGGGIKLCDFGFARAM--STNT-MVLTSIKGTPLYMSPELVEERPYDHT 197 SDVWSFGVlLWEi<-* D WS G+ L+E+ KIAA1278 198 ADLWSVGCILYEL 210 PF07714.7.ls: domain 1 of 1, from 21 to 271: score 71.9, E = 1.8e-18 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei + ++++GeG+FG+VykG+ k + VA K ++k g se+e KIAA1278 21 YHVLEMIGEGSFGRVYKGRRK----YSAQVVALKFIpKL-GRSEKE- 61 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd ++ + rE++iM+ l +HpNiV +l ++ + +Vt y+eg KIAA1278 62 -LRNLQREIEIMRGL-RHPNIVHMLDSFET-DKE----VVVVTDYAEG-E 103 LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV L L + +++L+ + +a+Q +++ YL+s+++ HRD N+L+ KIAA1278 104 LFQILED---DGKLPEDQVQAIAAQLVSALYYLHSHRILHRDMKPQNILL 150 senlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygkFtsk ++++ +K +DFG aR++ + + ++ k m+PE ++ + + KIAA1278 151 AKGGGIKLCDFGFARAM--STNT-MVLTSIKGTPLYMSPELVEERPYDHT 197 SDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPde D WS G+ L+E+ G +P ++ s ++++ l+ +d R p ++ KIAA1278 198 ADLWSVGCILYELAV-GTPP-FYATSIFQLVSLILKDPVRWPSTI--SPC 243 lYdlMlqCWaedPedRPtFsel..veeL<-* + ++ +dP +R + +l + ++ KIAA1278 244 FKNFLQGLLTKDPRQRLSWPDLlyHPFI 271 PF00069.15.ls: domain 1 of 1, from 21 to 271: score 355.7, E = 7e-104 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr y++le +G+GsfG+Vyk+++k + ++VA+K i+k ++++k+++++ r KIAA1278 21 YHVLEMIGEGSFGRVYKGRRKYSAQVVALKFIPKLGRSEKELRNLQR 67 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse Ei+i++ L+HpNIv ++d+fe+++++ +V++y+eg +Lf +l KIAA1278 68 --EIEIMRGLRHPNIVHMLDSFETDKEVVVVTDYAEG-----ELFQILE- 109 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv ++g+l +ed+++ ia Q++++l+YLHs++i+HRD+KP+NILl + g KIAA1278 110 --DDGKL--PEDQVQAIAAQLVSALYYLHSHRILHRDMKPQNILLAKGGG 155 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD + K++DFG+A+ + ++ lt++ GTp Ym+PE++ ++y++ +D KIAA1278 156 I----KLCDFGFARAM-StNTMvLTSIKGTPLYMSPELVE-ERPYDHTAD 199 vWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewdsi WS+G+ilyel+ G pPF+ + +ql+ +il+ p++++s + KIAA1278 200 LWSVGCILYELAVGTPPFYAT-----SIFQLVSLILKDPVRWPSTIS--- 241 srsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* + +k ++ ++L+kDP +Rl+++++l HP++ KIAA1278 242 ------------PCFKNFLQGLLTKDPRQRLSWPDLLYHPFI 271 PF02985.12.ls: domain 2 of 5, from 1105 to 1136: score 15.0, E = 0.26 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* e+++ +l +ll++p+ +VR+ + + Lg l+++ KIAA1278 1105 EsYR-----PLRSLLGHPENSVRAHTYRLLGHLLQHS 1136 PF02985.12.ls: domain 3 of 5, from 1143 to 1179: score 19.0, E = 0.016 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* + ++ ll lll +l+D+dp VR++A +a+g+ a ++ KIAA1278 1143 LqSQSGLLSLLLLGLGDKDPVVRCSASFAVGNAAYQA 1179 PF02985.12.ls: domain 4 of 5, from 1183 to 1219: score 17.7, E = 0.039 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++l +p +ll+Dp + +R+++a+aLg+l + KIAA1278 1183 GpALAAAVPSMTQLLGDPQAGIRRNVASALGNLGPEG 1219 //