hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22195030/chunk_1/iprscan-20080501-22195030.nocrc
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Query sequence: KIAA1277
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00799                                                 270.1    1.7e-76   1
SM00800                                                 124.6    1.1e-32   1
SM00801                                                  93.3    2.9e-23   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00800     1/1     591   683 ..     1   114 []   124.6  1.1e-32
SM00799     1/1     690   874 ..     1   204 []   270.1  1.7e-76
SM00801     1/1     925   992 ..     1    84 []    93.3  2.9e-23

Alignments of top-scoring domains:
SM00800: domain 1 of 1, from 591 to 683: score 124.6, E = 1.1e-32
                   *->pgrLfdyfvvvgldkskglepdelsalyqleapgrtGefqplgrsyk
                      +++Lf+yfvvv+l+k+                         +g +y 
    KIAA1277   591    ERQLFEYFVVVSLHKK------------------------QAGAAYV 613  

                   PeildryPek.......dfedfplpdsvpmFCFPeGidietwprstsspd
                   Pe+++++P k +++ + ++e +++++++p+FCFP+  d++    ++++ +
    KIAA1277   614 PELTQQFPLKlersfkfMREAEDQLKAIPQFCFPDAKDWV----PVQQFT 659  

                   pqfFsFVLTdedGsrrYGfCrrfy<-*
                   +++FsFVLT+edGsrr+G+Crr++   
    KIAA1277   660 SETFSFVLTGEDGSRRFGYCRRLL    683  

SM00799: domain 1 of 1, from 690 to 874: score 270.1, E = 1.7e-76
                   *->yapkcisCilSrlpffelFrkfLnelyrllasdsssellleellisl
                      + p+++ Ci+Srl +f+lF+++L+e+++++   +s++l+++ l++s 
    KIAA1277   690    RLPEVY-CIVSRLGCFSLFSRILDEVEKRRG--ISPALVQP-LMRSV 732  

                   llspvPlPppggslvlsslsSyvslgp.pgdlvvpielqrPddselplid
                   +++p+P  + g+++++      +++ p++g++v  iel+rP+ds+l++  
    KIAA1277   733 MEAPFP--ALGKTILV------KNFLPgSGTEV--IELCRPLDSRLEH-- 770  

                   enfdlheLfecLgvenvlqLfaslLlErrIifvSsnlstLsavieallaL
                     +d+ +Lf+ L+v++++++faslLlErr+if++ +ls+Ls++++a +aL
    KIAA1277   771 --VDFESLFSSLSVRHLVCVFASLLLERRVIFIADKLSILSKCCHAMVAL 818  

                   LyPFvWQhvyIPiLPasLldvLsAPtPFiiGvhssffeevkeepdeeddv
                   +yPF WQh+yIP+LP+ ++d++++PtPF+iG++ss +++ +e+p+ee  v
    KIAA1277   819 IYPFAWQHTYIPVLPPAMVDIVCSPTPFLIGLLSSSLPLLRELPLEE--V 866  

                   vvVDLDtg<-*
                   +vVDL +    
    KIAA1277   867 LVVDLVNS    874  

SM00801: domain 1 of 1, from 925 to 992: score 93.3, E = 2.9e-23
                   *->lndeireaaFlrffnsaqllggllYrnflrkhpitdaptwrkepgpv
                      ln+ ++e aF+rff  ++++g+  Y+ fl+             ++++
    KIAA1277   925    LNEVVSE-AFVRFF--VEIVGH--YSLFLT-----------SGEREE 955  

                   isFdkesFlksrpsselrpFlkkfletQmFsqFIeer<-*
                   ++ ++e+F+k+++s++lr+Fl++f+etQmF +FI+er   
    KIAA1277   956 RTLQREAFRKAVSSKSLRHFLEVFMETQMFRGFIQER    992  

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