hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22195030/chunk_1/iprscan-20080501-22195030.nocrc
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Query sequence: KIAA1277
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02141.11.ls DENN (AEX-3) domain                            306.4    4.7e-89   1
PF02141.11.fs DENN (AEX-3) domain                            304.7    1.6e-88   1
PF03456.8.ls uDENN domain                                   166.9    4.8e-47   1
PF03456.8.fs uDENN domain                                   165.0    1.8e-46   1
PF03455.9.fs dDENN domain                                    98.9    3.7e-27   1
PF03455.9.ls dDENN domain                                   100.7    3.9e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03456.8.fs   1/1     591   683 ..     1   108 []   165.0  1.8e-46
PF03456.8.ls   1/1     591   683 ..     1   108 []   166.9  4.8e-47
PF02141.11.ls   1/1     690   874 ..     1   231 []   306.4  4.7e-89
PF02141.11.fs   1/1     690   874 ..     1   231 []   304.7  1.6e-88
PF03455.9.fs   1/1     925   992 ..     1    81 []    98.9  3.7e-27
PF03455.9.ls   1/1     925   992 ..     1    81 []   100.7  3.9e-27

Alignments of top-scoring domains:
PF03456.8.fs: domain 1 of 1, from 591 to 683: score 165.0, E = 1.8e-46
                   *->carLfDyfVvVgldkkpsglgPDelagdneylPellrqFPSKllahy
                      +++Lf+yfVvV+l+kk+         ++ +y+Pel++qFP+Kl++++
    KIAA1277   591    ERQLFEYFVVVSLHKKQ---------AGAAYVPELTQQFPLKLERSF 628  

                   kedhedepfdlksipkFCfPegldsvsvrevnalrdpqfFsFvLTdeDsk
                   k ++e+e++ lk+ip+FCfP+++d+v+v+++    ++++FsFvLT+eD++
    KIAA1277   629 KFMREAEDQ-LKAIPQFCFPDAKDWVPVQQF----TSETFSFVLTGEDGS 673  

                   RtryGfCltfy<-*
                   R r+G+C++++   
    KIAA1277   674 R-RFGYCRRLL    683  

PF03456.8.ls: domain 1 of 1, from 591 to 683: score 166.9, E = 4.8e-47
                   *->carLfDyfVvVgldkkpsglgPDelagdneylPellrqFPSKllahy
                      +++Lf+yfVvV+l+kk+         ++ +y+Pel++qFP+Kl++++
    KIAA1277   591    ERQLFEYFVVVSLHKKQ---------AGAAYVPELTQQFPLKLERSF 628  

                   kedhedepfdlksipkFCfPegldsvsvrevnalrdpqfFsFvLTdeDsk
                   k ++e+e++ lk+ip+FCfP+++d+v+v+++    ++++FsFvLT+eD++
    KIAA1277   629 KFMREAEDQ-LKAIPQFCFPDAKDWVPVQQF----TSETFSFVLTGEDGS 673  

                   RtryGfCltfy<-*
                   R r+G+C++++   
    KIAA1277   674 R-RFGYCRRLL    683  

PF02141.11.ls: domain 1 of 1, from 690 to 874: score 306.4, E = 4.7e-89
                   *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk
                      r+p+++C++Srl++f++F+++L+e+++++++s+a+            
    KIAA1277   690    RLPEVYCIVSRLGCFSLFSRILDEVEKRRGISPAL------------ 724  

                   srdtvwrvltgvlevLhdirElEslirnLlyevplPapGktirvkvfvlg
                                        +++l+r++++ +p+Pa Gkti+vk+f++g
    KIAA1277   725 ---------------------VQPLMRSVME-APFPALGKTILVKNFLPG 752  

                   agvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlqLfaaaLl
                   +g        +++++l++pl+++le++d+++lF +L+v++++++fa++Ll
    KIAA1277   753 SG--------TEVIELCRPLDSRLEHVDFESLFSSLSVRHLVCVFASLLL 794  

                   ErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLlsAEdvLc
                   Er+++f+++kls+Ls+cchA+vaL+YP+ Wqh+yIPvLP++++   d++c
    KIAA1277   795 ERRVIFIADKLSILSKCCHAMVALIYPFAWQHTYIPVLPPAMV---DIVC 841  

                   APtPFlIGVhssffelvkdlpleidvvvVDLDtn<-*
                   +PtPFlIG++ss+++l ++lple +v+vVDL ++   
    KIAA1277   842 SPTPFLIGLLSSSLPLLRELPLE-EVLVVDLVNS    874  

PF02141.11.fs: domain 1 of 1, from 690 to 874: score 304.7, E = 1.6e-88
                   *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk
                      r+p+++C++Srl++f++F+++L+e+++++++s+a+            
    KIAA1277   690    RLPEVYCIVSRLGCFSLFSRILDEVEKRRGISPAL------------ 724  

                   srdtvwrvltgvlevLhdirElEslirnLlyevplPapGktirvkvfvlg
                                        +++l+r++++ +p+Pa Gkti+vk+f++g
    KIAA1277   725 ---------------------VQPLMRSVME-APFPALGKTILVKNFLPG 752  

                   agvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlqLfaaaLl
                   +g        +++++l++pl+++le++d+++lF +L+v++++++fa++Ll
    KIAA1277   753 SG--------TEVIELCRPLDSRLEHVDFESLFSSLSVRHLVCVFASLLL 794  

                   ErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLlsAEdvLc
                   Er+++f+++kls+Ls+cchA+vaL+YP+ Wqh+yIPvLP++++   d++c
    KIAA1277   795 ERRVIFIADKLSILSKCCHAMVALIYPFAWQHTYIPVLPPAMV---DIVC 841  

                   APtPFlIGVhssffelvkdlpleidvvvVDLDtn<-*
                   +PtPFlIG++ss+++l ++lple +v+vVDL ++   
    KIAA1277   842 SPTPFLIGLLSSSLPLLRELPLE-EVLVVDLVNS    874  

PF03455.9.fs: domain 1 of 1, from 925 to 992: score 98.9, E = 3.7e-27
                   *->lddqvreaFLrfFNasllggYrnfLryprkapewegardevvtFqke
                      l++ v+eaF+rfF ++++g+Y+ fL+ ++          e++t q+e
    KIAA1277   925    LNEVVSEAFVRFF-VEIVGHYSLFLTSGER---------EERTLQRE 961  

                   aFLksrprssqraFlsrlletQAVemFaeFIeeR<-*
                   aF+k+++++s+r+Fl+ ++etQ   mF +FI+eR   
    KIAA1277   962 AFRKAVSSKSLRHFLEVFMETQ---MFRGFIQER    992  

PF03455.9.ls: domain 1 of 1, from 925 to 992: score 100.7, E = 3.9e-27
                   *->lddqvreaFLrfFNasllggYrnfLryprkapewegardevvtFqke
                      l++ v+eaF+rfF ++++g+Y+ fL+ ++          e++t q+e
    KIAA1277   925    LNEVVSEAFVRFF-VEIVGHYSLFLTSGER---------EERTLQRE 961  

                   aFLksrprssqraFlsrlletQAVemFaeFIeeR<-*
                   aF+k+++++s+r+Fl+ ++etQ   mF +FI+eR   
    KIAA1277   962 AFRKAVSSKSLRHFLEVFMETQ---MFRGFIQER    992  

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